Browse Element(s) Details


OsAffx.848.1.S1_at

Description gb:NM_192311.1
DB_XREF= gi:34911705
GEN=P0707D10.17
TID=OsAffx.848.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0707D10.17 (P0707D10.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4574011/11retrotransposon protein, putative, unclassified
LOC_Os09g299205/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45690NANA1+26267348..26273020transposon protein, putative, unclassified
LOC_Os01g45700OsAffx.23674.2.S1_s_at11/111+26276323..26277012expressed protein
LOC_Os01g45700Os.6839.1.S1_at4/111+26276323..26277012expressed protein
LOC_Os01g45710OsAffx.23675.1.S1_at10/111+26279489..26280928hypothetical protein
LOC_Os01g45720Os.37905.1.S1_at7/111+26284555..26285416expressed protein
LOC_Os01g45730Os.30567.1.S1_at2/111+26286951..26288043Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os01g45740OsAffx.848.1.S1_at11/111+26297008..26299513retrotransposon protein, putative, unclassified
LOC_Os01g45750Os.5457.1.S1_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.17226.1.S1_s_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.57337.1.S1_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.17226.1.S1_x_at8/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45760Os.4680.1.S1_at11/111+26321517..26323793flavin-containing monooxygenase family protein, putative, expressed
LOC_Os01g45760Os.4680.2.S1_x_at11/111+26321517..26323793flavin-containing monooxygenase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.848.1.S1_at--654--8632Chr09:18193442..18193465 (24 bp)
TGGGAAAACCAATCCAGCCAGGCGA
LOC_Os09g29920
OsAffx.848.1.S1_at--866--1692Chr09:18193456..18193480 (25 bp)
AGCCAGGCGACCTCCTGAGGATAAA
LOC_Os09g29920
OsAffx.848.1.S1_at--194--8211Chr01:26299128..26299152 (25 bp)
GGAAGGTAATTTTCGCCTGCTGCAA
LOC_Os01g45740
OsAffx.848.1.S1_at--1107--5131Chr01:26299149..26299173 (25 bp)
GCAAACACCTGCCTCGATGTGGTAG
LOC_Os01g45740
OsAffx.848.1.S1_at--1108--4451Chr01:26299159..26299183 (25 bp)
GCCTCGATGTGGTAGTGCTCTGGAA
LOC_Os01g45740
OsAffx.848.1.S1_at--465--6131Chr01:26299205..26299229 (25 bp)
GAGGGCATTCTCGTGGGACTCCAAT
LOC_Os01g45740
OsAffx.848.1.S1_at--963--8112Chr09:18193685..18193709 (25 bp)
GGACTCCAATGGTCGCTTAGACAGT
LOC_Os09g29920
OsAffx.848.1.S1_at--306--4852Chr09:18193799..18193823 (25 bp)
GCTACAGAACTGTTATCCGGTGATA
LOC_Os09g29920
OsAffx.848.1.S1_at--1061--6551Chr01:26299363..26299387 (25 bp)
GATTCAGCTCCGGAAAATTCATCGC
LOC_Os01g45740
OsAffx.848.1.S1_at--782--4112Chr09:18193850..18193874 (25 bp)
CGCAGCCAAAATTCAGTCAGTCATT
LOC_Os09g29920
OsAffx.848.1.S1_at--313--8431Chr01:26299436..26299460 (25 bp)
GGCCTGTCTGTCTTTTGGTTAGATC
LOC_Os01g45740
Target Sequence 
TGGGAAAACCAATCCAGCCAGGCGACCTCCTGAGGATAAAAATCAAAAATGGAGGAAACCGTGTGAGGGGTGGATGAAAG
TTAATGTTGATGGCTCCTTTGATGCGCAGACTGGGAGTGGAGGCATTGGCGTGGTTATGCGGGACTGGAGCGGGAAGGTA
ATTTTCGCCTGCTGCAAACACCTGCCTCGATGTGGTAGTGCTCTGGAATCAGAGATTTTAGCTTGCAAGGAGGGCATTCT
CGTGGGACTCCAATGGTCGCTTAGACAGTTTGTAGTGGAGACGGACTGCTTGATGGTGGTGCAGATGCTCGAATCAAAGG
AGAGGGAAATGTCTGAGGTAGCTTTTTTGGTGAAAGAAGCTACAGAACTGTTATCCGGTGATAGGGAGATTCAGCTCCGG
AAAATTCATCGCAGCCAAAATTCAGTCAGTCATTTATTAGCAAATAAAGGCCGTTGTGAGGGCCTGTCTGTCTTTTGGTT
AGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.848.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis