Browse Element(s) Details


Os.4680.2.S1_x_at

Description gb:AU081508
DB_XREF= gi:6449566
DB_XREF=AU081508
CLONE=C12779_12Z
TID=Os.4680.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.4680 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0707D10.20 (P0707D10.20), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4576011/11flavin-containing monooxygenase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45740OsAffx.848.1.S1_at11/111+26297008..26299513retrotransposon protein, putative, unclassified
LOC_Os01g45750Os.5457.1.S1_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.17226.1.S1_s_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.57337.1.S1_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.17226.1.S1_x_at8/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45760Os.4680.1.S1_at11/111+26321517..26323793flavin-containing monooxygenase family protein, putative, expressed
LOC_Os01g45760Os.4680.2.S1_x_at11/111+26321517..26323793flavin-containing monooxygenase family protein, putative, expressed
LOC_Os01g45770OsAffx.23676.1.S1_at11/111+26327296..26328079hypothetical protein
LOC_Os01g45770OsAffx.23676.1.S1_s_at11/111+26327296..26328079hypothetical protein
LOC_Os01g45770Os.45912.1.S1_at4/111+26327296..26328079hypothetical protein
LOC_Os01g45780OsAffx.23677.1.S1_s_at11/111+26330325..26331020hypothetical protein
LOC_Os01g45780OsAffx.23677.1.S1_at10/111+26330325..26331020hypothetical protein
LOC_Os01g45790OsAffx.23678.1.S1_at7/111+26336500..26337432hypothetical protein
LOC_Os01g45800NANA1+26343687..26346910transposon protein, putative, unclassified, expressed
LOC_Os01g45810NANA1+26347545..26353700transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009851biological_processauxin biosynthesis
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4680.2.S1_x_at--1042--1371Chr01:26322806..26322830 (25 bp)
AGACCACATCAAATCCGGCAAAATT
LOC_Os01g45760
Os.4680.2.S1_x_at--913--9751Chr01:26323168..26323192 (25 bp)
TAATCCTCGCCACAGGCTACAGGAG
LOC_Os01g45760
Os.4680.2.S1_x_at--607--9871Chr01:26323185..26323209 (25 bp)
TACAGGAGCAACGTGCCATCTTGGC
LOC_Os01g45760
Os.4680.2.S1_x_at--193--2891Chr01:26323384..26323407 (24 bp)
AAGGATGCCGGTGACTTGTTCACGA
LOC_Os01g45760
Os.4680.2.S1_x_at--876--2031Chr01:26323396..26323420 (25 bp)
ACTTGTTCACGAGGGAGGGCATTTC
LOC_Os01g45760
Os.4680.2.S1_x_at--458--6131Chr01:26323447..26323471 (25 bp)
GAGGGCGGAATGGTCTCTACACCGT
LOC_Os01g45760
Os.4680.2.S1_x_at--836--9851Chr01:26323464..26323488 (25 bp)
TACACCGTCGGATTCACTCAGCGGG
LOC_Os01g45760
Os.4680.2.S1_x_at--453--7231Chr01:26323521..26323545 (25 bp)
GTCGCCAAAGACATACATTGCCAAT
LOC_Os01g45760
Os.4680.2.S1_x_at--870--7631Chr01:26323555..26323579 (25 bp)
GGGACCGATCTGCTATTAATGTACT
LOC_Os01g45760
Os.4680.2.S1_x_at--646--5151Chr01:26323588..26323612 (25 bp)
GCAACTCTTCCTTTTGATTTGACTG
LOC_Os01g45760
Os.4680.2.S1_x_at--476--351Chr01:26323656..26323680 (25 bp)
ATAACACCATGTTCTATCTCCCTTT
LOC_Os01g45760
Target Sequence 
AGACCACATCAAATCCGGCAAAATTAAGGTAGTGGGAGCAGTGANGGAGATGNCGAGGCAAGGGGTCAGGTTCACGGATG
GCAAGGAGGAGCAATTCGACACAATAATCCTCGCCACAGGCTACAGGAGCAACGTGCCATCTTGGCTCAAGGATGCCGGT
GACTTGTTCACGAGGGAGGGCATTTCCAAGGTCCCCTTCCCTAACAGCTGGAGAGGGCGGAATGGTCTCTACACCGTCGG
ATTCACTCAGCGGGGGCTCCTCGGCACGTCATCGGACGCCCTCAACGTCGCCAAAGACATACATTGCCAATGGAGAGAAA
GGGACCGATCTGCTATTAATGTACTTGAAATAAGCAACTCTTCCTTTTGATTTGACTGGAAATGTACAGTGTTTTGATTA
GGAATATTGTATTGTGTGCATATAACACCATGTTCTATCTCCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4680.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis