Browse Element(s) Details


OsAffx.23676.1.S1_s_at

Description tigr:9629.m04378
TID=OsAffx.23676.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4577011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45750Os.5457.1.S1_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.17226.1.S1_s_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.57337.1.S1_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.17226.1.S1_x_at8/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45760Os.4680.1.S1_at11/111+26321517..26323793flavin-containing monooxygenase family protein, putative, expressed
LOC_Os01g45760Os.4680.2.S1_x_at11/111+26321517..26323793flavin-containing monooxygenase family protein, putative, expressed
LOC_Os01g45770OsAffx.23676.1.S1_at11/111+26327296..26328079hypothetical protein
LOC_Os01g45770OsAffx.23676.1.S1_s_at11/111+26327296..26328079hypothetical protein
LOC_Os01g45770Os.45912.1.S1_at4/111+26327296..26328079hypothetical protein
LOC_Os01g45780OsAffx.23677.1.S1_s_at11/111+26330325..26331020hypothetical protein
LOC_Os01g45780OsAffx.23677.1.S1_at10/111+26330325..26331020hypothetical protein
LOC_Os01g45790OsAffx.23678.1.S1_at7/111+26336500..26337432hypothetical protein
LOC_Os01g45800NANA1+26343687..26346910transposon protein, putative, unclassified, expressed
LOC_Os01g45810NANA1+26347545..26353700transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23676.1.S1_s_at--1087--1031Chr01:26327549..26327573 (25 bp)
AGGTGCCGGCCTTCTGCGTGGACAA
LOC_Os01g45770
OsAffx.23676.1.S1_s_at--629--8431Chr01:26327542..26327566 (25 bp)
GGCCTTCTGCGTGGACAAGTTGTCA
LOC_Os01g45770
OsAffx.23676.1.S1_s_at--681--8131Chr01:26327530..26327554 (25 bp)
GGACAAGTTGTCAGCGGTCGACCTG
LOC_Os01g45770
OsAffx.23676.1.S1_s_at--996--10791Chr01:26327523..26327547 (25 bp)
TTGTCAGCGGTCGACCTGAACGTCG
LOC_Os01g45770
OsAffx.23676.1.S1_s_at--787--3851Chr01:26327508..26327532 (25 bp)
CTGAACGTCGCCATGTCGCGAGAAG
LOC_Os01g45770
OsAffx.23676.1.S1_s_at--448--771Chr01:26327496..26327520 (25 bp)
ATGTCGCGAGAAGGCGTGTCCCTGC
LOC_Os01g45770
OsAffx.23676.1.S1_s_at--385--9671Chr01:26327470..26327494 (25 bp)
TCAGCGGCTGCGTGAAGCCATGGCT
LOC_Os01g45770
OsAffx.23676.1.S1_s_at--1127--4332Chr12:19405812..19405894 (24 bp)
CCATGGCTGTCGACATGCACGTCGG
NONE
OsAffx.23676.1.S1_s_at--87--4691Chr01:26327415..26327439 (25 bp)
GCGGTTGAGATGAAGCCAGCACGTC
LOC_Os01g45770
OsAffx.23676.1.S1_s_at--917--2651Chr01:26327403..26327427 (25 bp)
AAGCCAGCACGTCCGGAGGATGTCT
LOC_Os01g45770
OsAffx.23676.1.S1_s_at--287--4011Chr01:26327372..26327396 (25 bp)
CGTGCTTCCACTCGTGTGCTGCAAG
LOC_Os01g45770
Target Sequence 
AGGTGCCGGCCTTCTGCGTGGACAAGTTGTCAGCGGTCGACCTGAACGTCGCCATGTCGCGAGAAGGCGTGTCCCTGCCT
CAGCGGCTGCGTGAAGCCATGGCTGTCGACATGCACGTCGGGGAACTGGAGTTGGCGGTTGAGATGAAGCCAGCACGTCC
GGAGGATGTCTCCCGGGCGTGCTTCCACTCGTGTGCTGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23676.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis