Browse Element(s) Details


OsAffx.23677.1.S1_s_at

Description tigr:9629.m04379
TID=OsAffx.23677.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4578011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45750Os.5457.1.S1_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.17226.1.S1_s_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.57337.1.S1_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.17226.1.S1_x_at8/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45760Os.4680.1.S1_at11/111+26321517..26323793flavin-containing monooxygenase family protein, putative, expressed
LOC_Os01g45760Os.4680.2.S1_x_at11/111+26321517..26323793flavin-containing monooxygenase family protein, putative, expressed
LOC_Os01g45770OsAffx.23676.1.S1_at11/111+26327296..26328079hypothetical protein
LOC_Os01g45770OsAffx.23676.1.S1_s_at11/111+26327296..26328079hypothetical protein
LOC_Os01g45770Os.45912.1.S1_at4/111+26327296..26328079hypothetical protein
LOC_Os01g45780OsAffx.23677.1.S1_s_at11/111+26330325..26331020hypothetical protein
LOC_Os01g45780OsAffx.23677.1.S1_at10/111+26330325..26331020hypothetical protein
LOC_Os01g45790OsAffx.23678.1.S1_at7/111+26336500..26337432hypothetical protein
LOC_Os01g45800NANA1+26343687..26346910transposon protein, putative, unclassified, expressed
LOC_Os01g45810NANA1+26347545..26353700transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23677.1.S1_s_at--118--4691Chr01:26330950..26330974 (25 bp)
GCGGCGGCAGATACCTGGTCCCCGA
LOC_Os01g45780
OsAffx.23677.1.S1_s_at--974--4651Chr01:26330947..26330971 (25 bp)
GCGGCAGATACCTGGTCCCCGAGTT
LOC_Os01g45780
OsAffx.23677.1.S1_s_at--167--8611Chr01:26330935..26330959 (25 bp)
TGGTCCCCGAGTTCAACCCCATCAT
LOC_Os01g45780
OsAffx.23677.1.S1_s_at--264--1651Chr01:26330906..26330930 (25 bp)
AGCGACGCGGCACGCTACTCTGTTT
LOC_Os01g45780
OsAffx.23677.1.S1_s_at--84--1851Chr01:26330895..26330919 (25 bp)
ACGCTACTCTGTTTCTCGTCGAAGA
LOC_Os01g45780
OsAffx.23677.1.S1_s_at--1077--3711Chr01:26330892..26330916 (25 bp)
CTACTCTGTTTCTCGTCGAAGAGGG
LOC_Os01g45780
OsAffx.23677.1.S1_s_at--538--7311Chr01:26330863..26330887 (25 bp)
GTGCTGAGCAGGATATCGACTACCC
LOC_Os01g45780
OsAffx.23677.1.S1_s_at--558--7231Chr01:26330831..26330855 (25 bp)
GTCGCCCATGGGACAGCCACAGCGT
LOC_Os01g45780
OsAffx.23677.1.S1_s_at--871--791Chr01:26330824..26330848 (25 bp)
ATGGGACAGCCACAGCGTGGTCTCA
LOC_Os01g45780
OsAffx.23677.1.S1_s_at--898--2151Chr01:26330819..26330843 (25 bp)
ACAGCCACAGCGTGGTCTCATGACA
LOC_Os01g45780
OsAffx.23677.1.S1_s_at--908--8591Chr01:26330807..26330831 (25 bp)
TGGTCTCATGACAGTGGAGTCCTGG
LOC_Os01g45780
Target Sequence 
GCGGCGGCAGATACCTGGTCCCCGAGTTCAACCCCATCATCGGCAGCGACGCGGCACGCTACTCTGTTTCTCGTCGAAGA
GGGGGGTGTGCTGAGCAGGATATCGACTACCCCTCCCAGGTCGCCCATGGGACAGCCACAGCGTGGTCTCATGACAGTGG
AGTCCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23677.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis