Browse Element(s) Details


OsAffx.23677.1.S1_at

Description tigr:9629.m04379
TID=OsAffx.23677.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4578010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45750Os.5457.1.S1_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.17226.1.S1_s_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.57337.1.S1_at11/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45750Os.17226.1.S1_x_at8/111+26300416..26307278bile acid transporter family protein, expressed
LOC_Os01g45760Os.4680.1.S1_at11/111+26321517..26323793flavin-containing monooxygenase family protein, putative, expressed
LOC_Os01g45760Os.4680.2.S1_x_at11/111+26321517..26323793flavin-containing monooxygenase family protein, putative, expressed
LOC_Os01g45770OsAffx.23676.1.S1_at11/111+26327296..26328079hypothetical protein
LOC_Os01g45770OsAffx.23676.1.S1_s_at11/111+26327296..26328079hypothetical protein
LOC_Os01g45770Os.45912.1.S1_at4/111+26327296..26328079hypothetical protein
LOC_Os01g45780OsAffx.23677.1.S1_s_at11/111+26330325..26331020hypothetical protein
LOC_Os01g45780OsAffx.23677.1.S1_at10/111+26330325..26331020hypothetical protein
LOC_Os01g45790OsAffx.23678.1.S1_at7/111+26336500..26337432hypothetical protein
LOC_Os01g45800NANA1+26343687..26346910transposon protein, putative, unclassified, expressed
LOC_Os01g45810NANA1+26347545..26353700transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23677.1.S1_at--970--2111Chr01:26330398..26330821 (25 bp)
ACAGTGGAGTCCTGGTTTTAGCAAA
LOC_Os01g45780
OsAffx.23677.1.S1_at--185--7471NONE
GTGGAGTCCTGGTTTTAGCAAAAGT
NONE
OsAffx.23677.1.S1_at--687--6091Chr01:26330392..26330815 (25 bp)
GAGTCCTGGTTTTAGCAAAAGTATT
LOC_Os01g45780
OsAffx.23677.1.S1_at--497--10011Chr01:26330380..26330404 (25 bp)
TAGCAAAAGTATTGAGCGGCACCAA
LOC_Os01g45780
OsAffx.23677.1.S1_at--348--6871Chr01:26330372..26330396 (25 bp)
GTATTGAGCGGCACCAATATTCTCA
LOC_Os01g45780
OsAffx.23677.1.S1_at--340--5891Chr01:26330367..26330391 (25 bp)
GAGCGGCACCAATATTCTCAATGCG
LOC_Os01g45780
OsAffx.23677.1.S1_at--704--4691Chr01:26330365..26330389 (25 bp)
GCGGCACCAATATTCTCAATGCGCA
LOC_Os01g45780
OsAffx.23677.1.S1_at--197--3371Chr01:26330361..26330385 (25 bp)
CACCAATATTCTCAATGCGCAACTC
LOC_Os01g45780
OsAffx.23677.1.S1_at--15--3191Chr01:26330358..26330382 (25 bp)
CAATATTCTCAATGCGCAACTCGAC
LOC_Os01g45780
OsAffx.23677.1.S1_at--908--3111Chr01:26330357..26330381 (25 bp)
AATATTCTCAATGCGCAACTCGACT
LOC_Os01g45780
OsAffx.23677.1.S1_at--1020--10191Chr01:26330355..26330379 (25 bp)
TATTCTCAATGCGCAACTCGACTTG
LOC_Os01g45780
Target Sequence 
ACAGTGGAGTCCTGGTTTTAGCAAAAGTATTGAGCGGCACCAATATTCTCAATGCGCAACTCGACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23677.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis