Browse Element(s) Details


OsAffx.8550.1.S1_at

Description gb:NM_194642.1
DB_XREF= gi:37530643
TID=OsAffx.8550.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative gypsy-type retrotransposon protein (OSJNAa0079B05.15), mRNA.
PROD=putative gypsy-type retrotransposon protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0312011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g03080OsAffx.20783.1.S1_at11/1110+1276774..1278273hypothetical protein
LOC_Os10g03090NANA10+1285137..1285511expressed protein
LOC_Os10g03100Os.46475.1.S1_at11/1110+1292562..1295093Leucine Rich Repeat family protein, expressed
LOC_Os10g03110OsAffx.8551.1.S1_at11/1110+1295672..1300612retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g03120OsAffx.8550.1.S1_at11/1110+1302208..1304668retrotransposon protein, putative, unclassified
LOC_Os10g03130OsAffx.8549.1.S1_at11/1110+1306156..1308012transposon protein, putative, unclassified
LOC_Os10g03140OsAffx.422.1.S1_at11/1110+1309007..1309645retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g03150Os.24831.3.S1_s_at10/1110+1314732..1317041retrotransposon protein, putative, unclassified
LOC_Os10g03150Os.24831.1.S1_x_at8/1110+1314732..1317041retrotransposon protein, putative, unclassified
LOC_Os10g03150Os.24831.3.S1_x_at6/1110+1314732..1317041retrotransposon protein, putative, unclassified
LOC_Os10g03150Os.24831.4.S1_x_at2/1110+1314732..1317041retrotransposon protein, putative, unclassified
LOC_Os10g03150Os.55127.1.S1_at1/1110+1314732..1317041retrotransposon protein, putative, unclassified
LOC_Os10g03160OsAffx.8548.1.S1_at11/1110+1321050..1322111transposon protein, putative, unclassified
LOC_Os10g03170OsAffx.15648.1.S1_at1/1110+1322987..1325433hypothetical protein
LOC_Os10g03180NANA10+1325907..1326950hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8550.1.S1_at--764--2851Chr10:1303973..1303997 (25 bp)
AAGTCGTCTGAGCTGGAGGACCACC
LOC_Os10g03120
OsAffx.8550.1.S1_at--335--1031Chr10:1304009..1304033 (25 bp)
AGGGAATCCCTTCGCAAGGACTTCA
LOC_Os10g03120
OsAffx.8550.1.S1_at--514--5691Chr10:1304027..1304051 (25 bp)
GACTTCACCCGATTACACCAGGTTG
LOC_Os10g03120
OsAffx.8550.1.S1_at--58--6691Chr10:1304048..1304072 (25 bp)
GTTGCTGGTGAACTCGGAATCTACT
LOC_Os10g03120
OsAffx.8550.1.S1_at--641--2411Chr10:1304155..1304179 (25 bp)
AAAACACGCCGCGAAGGTCGCTGAG
LOC_Os10g03120
OsAffx.8550.1.S1_at--1117--1371Chr10:1304181..1304205 (25 bp)
AGACTTGTACCAGAGTTCGCACGGG
LOC_Os10g03120
OsAffx.8550.1.S1_at--912--8991Chr10:1304229..1304253 (25 bp)
TGAAGATCGCTCATCCTGAGGTCGA
LOC_Os10g03120
OsAffx.8550.1.S1_at--1014--6031Chr10:1304330..1304354 (25 bp)
GAGTTAATCCTCTCTTTTTACGAAG
LOC_Os10g03120
OsAffx.8550.1.S1_at--1020--1331Chr10:1304508..1304532 (25 bp)
AGAGTGGACGTCCTGATTCACCCGA
LOC_Os10g03120
OsAffx.8550.1.S1_at--142--1451Chr10:1304580..1304604 (25 bp)
AGAACGCCATGATAGCTGTGAACGC
LOC_Os10g03120
OsAffx.8550.1.S1_at--169--8991Chr10:1304598..1304622 (25 bp)
TGAACGCAGCTGAAGTCGTCACTTC
LOC_Os10g03120
Target Sequence 
AAGTCGTCTGAGCTGGAGGACCACCTGACGACAATCAGGGAATCCCTTCGCAAGGACTTCACCCGATTACACCAGGTTGC
TGGTGAACTCGGAATCTACTCCTCGATTCCGCAGCACCCCGACGAAACCTCCTTGACGTTCGGTCTACAAGACCTCGTCA
AGGCGATGGAGGCAGCGCCTGCAAAACACGCCGCGAAGGTCGCTGAGGAGACTTGTACCAGAGTTCGCACGGGCGCCTGC
CATGTCCTCGCCTGCGTGAAGATCGCTCATCCTGAGGTCGACCTGGAGCAGGCCATGGCGAAGGGAGGAGCTGATGACAC
ACGCGAGGACGTGATGTCGGAGGTGGCGGATTTAGGGGAGTTAATCCTCTCTTTTTACGAAGAATGTCTTGATGTTGAGG
ACGTCCAGCAGAGTGGACGTCCTGATTCACCCGAGTTCGCTCCGGTTGCATCTCCGCAAGCATCCAGTCCGGATGTAAAC
GAGAACGCCATGATAGCTGTGAACGCAGCTGAAGTCGTCACTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8550.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis