Browse Element(s) Details


OsAffx.8749.1.S1_at

Description gb:XM_354062.1
DB_XREF= gi:35189557
TID=OsAffx.8749.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g013004/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01260Os.53833.1.S1_at11/117+153181..156900RNA-binding protein homolog, putative, expressed
LOC_Os07g01270OsAffx.26147.4.S1_s_at11/117+159138..171211transposon protein, putative, unclassified
LOC_Os07g01270OsAffx.26147.2.S1_x_at9/117+159138..171211transposon protein, putative, unclassified
LOC_Os07g01270Os.44572.1.S1_x_at8/117+159138..171211transposon protein, putative, unclassified
LOC_Os07g01280OsAffx.28220.1.S1_s_at11/117+172041..175550hypothetical protein
LOC_Os07g01290NANA7+177299..179836transposon protein, putative, Mutator sub-class
LOC_Os07g01300Os.51588.1.S1_x_at11/117+180814..181542expressed protein
LOC_Os07g01300Os.51588.1.S1_at11/117+180814..181542expressed protein
LOC_Os07g01300OsAffx.8749.1.S1_at4/117+180814..181542expressed protein
LOC_Os07g01310Os.40446.1.S1_at9/117+189343..194728Glutamate receptor 3.4 precursor, putative, expressed
LOC_Os07g01320Os.6121.1.S1_at11/117+194377..198122expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8749.1.S1_at--964--1971Chr07:181736..181760 (25 bp)
ACATCCCTCAATTGCTTAAACCGGT
NONE
OsAffx.8749.1.S1_at--880--3691Chr07:181730..181754 (25 bp)
CTCAATTGCTTAAACCGGTGCAAAT
NONE
OsAffx.8749.1.S1_at--796--7771Chr07:181714..181738 (25 bp)
GGTGCAAATCAACTACCAGGGCAGT
NONE
OsAffx.8749.1.S1_at--606--2511Chr07:181575..181728 (25 bp)
AACTACCAGGGCAGTATTTGACTTA
NONE
OsAffx.8749.1.S1_at--485--5031Chr07:181565..181718 (25 bp)
GCAGTATTTGACTTAGGCGGCAGTG
NONE
OsAffx.8749.1.S1_at--518--2051Chr07:181555..181579 (25 bp)
ACTTAGGCGGCAGTGAGCTTGAGCA
NONE
OsAffx.8749.1.S1_at--546--8911Chr07:181542..181566 (25 bp)
TGAGCTTGAGCAGCGCGGGCGGATA
NONE
OsAffx.8749.1.S1_at--538--9351Chr07:181279..181363 (25 bp)
TCGCAATGCTCGAGGTTTGTGAACC
LOC_Os07g01300
OsAffx.8749.1.S1_at--113--7871Chr07:181266..181290 (25 bp)
GGTTTGTGAACCTAAGACGGTGGAT
LOC_Os07g01300
OsAffx.8749.1.S1_at--1035--4291Chr07:181256..181280 (25 bp)
CCTAAGACGGTGGATGCAATTTTTT
LOC_Os07g01300
OsAffx.8749.1.S1_at--567--10351Chr07:181234..181258 (25 bp)
TTTTTGACTGGCATGAAGGGCCAAC
LOC_Os07g01300
Target Sequence 
ACATCCCTCAATTGCTTAAACCGGTGCAAATCAACTACCAGGGCAGTATTTGACTTAGGCGGCAGTGAGCTTGAGCAGCG
CGGGCGGATATGGCCAGTTATCATAGCGAGGCATCTTCCGCTTCTTCCCGTCGCACATCAGCCTCGCCCATCCCGCATCG
CATGGGGCCAATGGAGTATCAACCTACGGTGCTGTGCAGATGCAGAGCGAAGGCGGCACGATGGATCTCGTGGAGCCGTG
ACAACCCGGGGCGACGATACTACAAATGTCGCAATGCTCGAGGTTTGTGAACCTAAGACGGTGGATGCAATTTTTTTTGA
CTGGCATGAAGGGCCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8749.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis