Browse Element(s) Details


OsAffx.887.1.S1_x_at

Description gb:NM_192013.1
DB_XREF= gi:34911109
GEN=OJ1117_G01.24
TID=OsAffx.887.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1117_G01.24 (OJ1117_G01.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g082901/11hypothetical protein
LOC_Os05g133501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08250NANA10+4222822..4226151transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08260Os.47463.1.S1_x_at6/1110+4227260..4232923transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08260Os.14491.2.S1_x_at5/1110+4227260..4232923transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08269NANA10+4241881..4242388NA
LOC_Os10g08280Os.46719.1.S1_at11/1110+4244162..4245962expressed protein
LOC_Os10g08290OsAffx.18171.1.S1_at11/1110+4246986..4247479hypothetical protein
LOC_Os10g08290OsAffx.887.1.S1_x_at1/1110+4246986..4247479hypothetical protein
LOC_Os10g08300NANA10+4250350..4253395retrotransposon protein, putative, unclassified
LOC_Os10g08319Os.46718.1.S1_at11/1110+4263848..4269339Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.887.1.S1_x_at--472--4551Chr01:28154048..28154072 (25 bp)
GCGCCAACAACACATGTCTTCGGAT
NONE
OsAffx.887.1.S1_x_at--10--2212Chr01:28154054..28154078 (25 bp)
ACAACACATGTCTTCGGATCTTCAC
NONE
OsAffx.887.1.S1_x_at--132--2471Chr01:28154056..28154080 (25 bp)
AACACATGTCTTCGGATCTTCACGG
NONE
OsAffx.887.1.S1_x_at--485--3491Chr01:28154060..28154084 (25 bp)
CATGTCTTCGGATCTTCACGGACAA
NONE
OsAffx.887.1.S1_x_at--445--3631Chr01:28154065..28154089 (25 bp)
CTTCGGATCTTCACGGACAATACTC
NONE
OsAffx.887.1.S1_x_at--211--7971Chr01:28154069..28154093 (25 bp)
GGATCTTCACGGACAATACTCATCA
NONE
OsAffx.887.1.S1_x_at--842--9552Chr01:28154072..28154096 (25 bp)
TCTTCACGGACAATACTCATCATCA
NONE
OsAffx.887.1.S1_x_at--392--331Chr01:28154084..28154215 (25 bp)
ATACTCATCATCAGTTACGCTTCAT
NONE
OsAffx.887.1.S1_x_at--203--411Chr01:28154093..28154224 (25 bp)
ATCAGTTACGCTTCATCGACGACAT
NONE
OsAffx.887.1.S1_x_at--370--4655Chr01:28154254..28154278 (25 bp)
GCGTCACCGACGACGGCATCGATCA
NONE
OsAffx.887.1.S1_x_at--657--42311Chr11:5240116..5240140 (25 bp)
CCGACGACGGCATCGATCACGTCAT
NONE
Target Sequence 
GCGCCAACAACACATGTCTTCGGATCTTCACGGACAATACTCATCATCAGTTACGCTTCATCGACGACATCGACCGCGTC
CTTTACGACCGCAACGACCGCGTCACCGACGACGGCATCGATCACGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.887.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis