Browse Element(s) Details


OsAffx.8891.1.S1_at

Description gb:NM_193891.1
DB_XREF= gi:34914865
GEN=P0416G11.18
TID=OsAffx.8891.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0416G11.18 (P0416G11.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g280506/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28020NANA1+15993124..15995924hypothetical protein
LOC_Os01g28030Os.22884.1.A1_at10/111+15999516..16004495Peroxidase 24 precursor, putative, expressed
LOC_Os01g28040OsAffx.24046.7.S1_x_at11/111+16008097..16013388hAT family dimerisation domain containing protein
LOC_Os01g28040OsAffx.24046.3.S1_x_at6/111+16008097..16013388hAT family dimerisation domain containing protein
LOC_Os01g28040OsAffx.24046.5.S1_x_at3/111+16008097..16013388hAT family dimerisation domain containing protein
LOC_Os01g28040Os.56292.1.S1_x_at2/111+16008097..16013388hAT family dimerisation domain containing protein
LOC_Os01g28040OsAffx.24046.2.S1_x_at2/111+16008097..16013388hAT family dimerisation domain containing protein
LOC_Os01g28040Os.56292.1.S1_at1/111+16008097..16013388hAT family dimerisation domain containing protein
LOC_Os01g28050OsAffx.8891.1.S1_at6/111+16020025..16020822hypothetical protein
LOC_Os01g28060Os.46306.1.S1_x_at6/111+16030986..16037496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28060OsAffx.940.1.S1_x_at1/111+16030986..16037496transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28070NANA1+16038018..16039315transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28080OsAffx.23425.1.S1_at11/111+16040982..16041425hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8891.1.S1_at--1040--9411Chr01:16020533..16020557 (25 bp)
TCGTGCCGTGGAGCAAGACGTGCTA
LOC_Os01g28050
OsAffx.8891.1.S1_at--266--5951Chr01:16020543..16020567 (25 bp)
GAGCAAGACGTGCTACTGCTTCTAC
LOC_Os01g28050
OsAffx.8891.1.S1_at--423--3731Chr01:16020555..16020579 (25 bp)
CTACTGCTTCTACCGGCGCGACGAG
LOC_Os01g28050
OsAffx.8891.1.S1_at--241--6071Chr01:16020622..16020646 (25 bp)
GAGTACGAGATCACGGAACCCGGTA
LOC_Os01g28050
OsAffx.8891.1.S1_at--656--4071Chr01:16020675..16020699 (25 bp)
CGACGACGACTACTGGGTACTTTGC
LOC_Os01g28050
OsAffx.8891.1.S1_at--386--7651Chr01:16020689..16020713 (25 bp)
GGGTACTTTGCCACGTCAGGAAGAC
LOC_Os01g28050
OsAffx.8891.1.S1_at--774--10711Chr01:16021284..16021308 (25 bp)
TTGCATCCACTTGGAGAAGCCATGG
NONE
OsAffx.8891.1.S1_at--836--7631Chr01:16021308..16021332 (25 bp)
GGGATCCCGAGCGTGTAAGCCGCAT
NONE
OsAffx.8891.1.S1_at--52--7451Chr01:16021320..16021344 (25 bp)
GTGTAAGCCGCATTGTGCCACCAAT
NONE
OsAffx.8891.1.S1_at--1144--4931Chr01:16021329..16021353 (25 bp)
GCATTGTGCCACCAATTGTCACGAA
NONE
OsAffx.8891.1.S1_at--295--3171Chr01:16021342..16021366 (25 bp)
AATTGTCACGAACCTTGCCGCACTG
NONE
Target Sequence 
TCGTGCCGTGGAGCAAGACGTGCTACTGCTTCTACCGGCGCGACGAGGGCGGCCGGCTGAGCACCTTCGGGGGAGGGTGG
GTCTTGGCGGAGTACGAGATCACGGAACCCGGTACGTACCGGCGCGCCGACGAGGAGGAAGACGACGACGACTACTGGGT
ACTTTGCCACGTCAGGAAGACGGCAAGCAAGAAGAGGAAGCGGAATCGCTGCGATGAGGCCGTGGCTGCACGGGCTGTAG
CCGGNANNNNNTNTNNNNNNNNNNTCNTNNGNNNNNNNACANNNNANNNATATTTGATATACCCCCTTGCATCCACTTGG
AGAAGCCATGGGGATCCCGAGCGTGTAAGCCGCATTGTGCCACCAATTGTCACGAACCTTGCCGCACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8891.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis