Browse Element(s) Details


OsAffx.8923.1.S1_at

Description gb:NM_193724.1
DB_XREF= gi:34914531
GEN=OSJNBa0094H06.12
TID=OsAffx.8923.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) polyprotein (OSJNBa0094H06.12), mRNA.
PROD=polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g299509/11retrotransposon protein, putative, unclassified
LOC_Os03g591909/11retrotransposon protein, putative, unclassified
LOC_Os04g518708/11retrotransposon protein, putative, unclassified
LOC_Os11g361107/11retrotransposon protein, putative, unclassified
LOC_Os07g097606/11retrotransposon protein, putative, unclassified
LOC_Os05g302903/11retrotransposon protein, putative, unclassified
LOC_Os11g459081/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29900Os.19165.1.S1_at11/1111+16877037..16880186expressed protein
LOC_Os11g29910OsAffx.7252.1.S1_at11/1111+16881166..16881880Plastocyanin-like domain containing protein
LOC_Os11g29920OsAffx.31213.1.S1_x_at11/1111+16882575..16890973NB-ARC domain containing protein, expressed
LOC_Os11g29920OsAffx.31213.3.S1_s_at6/1111+16882575..16890973NB-ARC domain containing protein, expressed
LOC_Os11g29930OsAffx.19075.1.S1_x_at11/1111+16892140..16892436hypothetical protein
LOC_Os11g29930OsAffx.19075.1.S1_at11/1111+16892140..16892436hypothetical protein
LOC_Os11g29940OsAffx.19076.1.S1_at10/1111+16897034..16899228hypothetical protein
LOC_Os11g29940Os.51841.1.S1_x_at1/1111+16897034..16899228hypothetical protein
LOC_Os11g29950OsAffx.8923.1.S1_at9/1111+16902731..16904701retrotransposon protein, putative, unclassified
LOC_Os11g29960Os.51887.1.S1_x_at1/1111+16905146..16908244retrotransposon protein, putative, unclassified
LOC_Os11g29970OsAffx.31214.1.S1_at11/1111+16909269..16914755NB-ARC domain containing protein, expressed
LOC_Os11g29980OsAffx.19077.1.S1_at11/1111+16922819..16926281NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8923.1.S1_at--389--657Chr11:20730697..20730721 (25 bp)
ATGCATGATCCTCGAACTGGTCACT
LOC_Os11g36110
OsAffx.8923.1.S1_at--145--9277Chr11:20730705..20730729 (25 bp)
TCCTCGAACTGGTCACTTGGATGTT
LOC_Os11g36110
OsAffx.8923.1.S1_at--1053--4097Chr11:20730709..20730733 (25 bp)
CGAACTGGTCACTTGGATGTTGTTC
LOC_Os11g36110
OsAffx.8923.1.S1_at--118--6296Chr11:20730724..20730748 (25 bp)
GATGTTGTTCATAAGATTCTCAGAT
LOC_Os11g36110
OsAffx.8923.1.S1_at--212--5696Chr11:20730759..20730783 (25 bp)
GACTCCTGGAAAGGGATTGTGGTTT
LOC_Os11g36110
OsAffx.8923.1.S1_at--455--10835Chr11:20730775..20730799 (25 bp)
TTGTGGTTTAGGAAGAATGGGCATC
LOC_Os11g36110
OsAffx.8923.1.S1_at--887--2955Chr11:20730790..20730814 (25 bp)
AATGGGCATCTAAATGTGGAAGGAT
LOC_Os11g36110
OsAffx.8923.1.S1_at--17--871Chr01:18027188..18027212 (25 bp)
ATGGCTTTGAGCTTCAGTGAGATGT
NONE
OsAffx.8923.1.S1_at--611--1551Chr01:18027179..18027203 (25 bp)
AGCTTCAGTGAGATGTTGTGGATGA
NONE
OsAffx.8923.1.S1_at--954--4176Chr11:20731083..20731107 (25 bp)
CCCTGTTCAGCATGATCGCACTAAA
NONE
OsAffx.8923.1.S1_at--319--7714Chr03:33645944..33645968 (25 bp)
GGGTGCTTAGGTTGGAGTATATTAA
LOC_Os03g59190
Target Sequence 
ATGCATGATCCTCGAACTGGTCACTTGGATGTTGTTCATAAGATTCTCAGATATCTGAAAGGGACTCCTGGAAAGGGATT
GTGGTTTAGGAAGAATGGGCATCTAAATGTGGAAGGATATTGTGATGCTGATTGGGCGAGTAGTATGGATGATAGAAGAT
CTACATCAGGTTATTGTGTGTTTGTTGGTGGTAATCTTGTTTCTTGGCGAAGTAAGAAGCAGGCAGTGGTGGCTCGGTCT
ACCGCAGAAGCAGAATACAGAGCTATGGCTTTGAGCTTCAGTGAGATGTTGTGGATGAGGAGCTTGTTGACTGAATTGCG
AGTGCTAAGAAGTGACACTGTGATGCTTCATTGTGACAATAAATCAGCCATCAGCATTGCAAACAACCCTGTTCAGCATG
ATCGCACTAAACATGTGGAGATTGATAGGTTCTTCATTAAGGAGAAGATTGATAGCGGGGTGCTTAGGTTGGAGTATATT
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8923.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis