Browse Element(s) Details


OsAffx.8942.1.S1_x_at

Description gb:NM_193643.1
DB_XREF= gi:34914369
GEN=B1168H06.4
TID=OsAffx.8942.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1168H06.4 (B1168H06.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3349011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33440OsAffx.673.1.S1_at11/111+18739470..18742196retrotransposon protein, putative, unclassified
LOC_Os01g33440OsAffx.673.1.S1_x_at11/111+18739470..18742196retrotransposon protein, putative, unclassified
LOC_Os01g33440OsAffx.17708.1.S1_at1/111+18739470..18742196retrotransposon protein, putative, unclassified
LOC_Os01g33450OsAffx.23489.1.S1_at10/111+18743766..18745290expressed protein
LOC_Os01g33460OsAffx.5954.5.S1_x_at6/111+18752291..18757613retrotransposon protein, putative, unclassified
LOC_Os01g33460OsAffx.5954.1.S1_x_at4/111+18752291..18757613retrotransposon protein, putative, unclassified
LOC_Os01g33460OsAffx.5954.3.S1_x_at3/111+18752291..18757613retrotransposon protein, putative, unclassified
LOC_Os01g33470OsAffx.5954.4.S1_x_at2/111+18758807..18760302hypothetical protein
LOC_Os01g33480OsAffx.23491.1.S1_at11/111+18762557..18762961hypothetical protein
LOC_Os01g33490Os.53265.1.S1_at11/111+18765185..18766453F-box domain containing protein, expressed
LOC_Os01g33490OsAffx.8942.1.S1_x_at11/111+18765185..18766453F-box domain containing protein, expressed
LOC_Os01g33500NANA1+18768366..18768572hypothetical protein
LOC_Os01g33510OsAffx.2139.2.S1_at11/111+18771261..18771817hypothetical protein
LOC_Os01g33514Os.8289.1.A1_at11/111+18773839..18775776expressed protein
LOC_Os01g33520OsAffx.21182.2.S1_x_at11/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33520OsAffx.21182.1.S1_at11/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33520OsAffx.21182.2.S1_at10/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33520OsAffx.21182.3.S1_x_at2/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33530OsAffx.11302.2.S1_at11/111+18782769..18785003hypothetical protein
LOC_Os01g33530OsAffx.11302.2.S1_s_at11/111+18782769..18785003hypothetical protein
LOC_Os01g33530OsAffx.11302.1.S1_at1/111+18782769..18785003hypothetical protein
LOC_Os01g33540Os.25513.1.S1_at11/111+18786069..18789030transposon protein, putative, unclassified, expressed
LOC_Os01g33550OsAffx.23492.1.S1_at11/111+18791153..18791679hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8942.1.S1_x_at--325--5811Chr01:18765843..18765867 (25 bp)
GACGCGATTCTCGTCTTTGATCTCG
LOC_Os01g33490
OsAffx.8942.1.S1_x_at--1121--91Chr01:18765837..18765861 (25 bp)
ATTCTCGTCTTTGATCTCGCGACGG
LOC_Os01g33490
OsAffx.8942.1.S1_x_at--331--5751Chr01:18765769..18765793 (25 bp)
GACGGCACACCTGTTCGTCTTCGGT
LOC_Os01g33490
OsAffx.8942.1.S1_x_at--1059--10611Chr01:18765756..18765780 (25 bp)
TTCGTCTTCGGTGGGCGGCTGTTCT
LOC_Os01g33490
OsAffx.8942.1.S1_x_at--565--7811Chr01:18765600..18765624 (25 bp)
GGTCGGCATGGCAGCTTCTGGCATT
LOC_Os01g33490
OsAffx.8942.1.S1_x_at--688--1551Chr01:18765588..18765612 (25 bp)
AGCTTCTGGCATTTTCAGGCTGCAG
LOC_Os01g33490
OsAffx.8942.1.S1_x_at--62--8291Chr01:18765581..18765605 (25 bp)
GGCATTTTCAGGCTGCAGACAGAAT
LOC_Os01g33490
OsAffx.8942.1.S1_x_at--706--7651Chr01:18765555..18765579 (25 bp)
GGGATCGTTTGCCTGTACAATGCTG
LOC_Os01g33490
OsAffx.8942.1.S1_x_at--437--6851Chr01:18765549..18765573 (25 bp)
GTTTGCCTGTACAATGCTGTAGATG
LOC_Os01g33490
OsAffx.8942.1.S1_x_at--163--7531Chr01:18765490..18765514 (25 bp)
GTGGACTAGGCTGTCACGAGTGTCT
LOC_Os01g33490
OsAffx.8942.1.S1_x_at--307--3351Chr01:18765476..18765500 (25 bp)
CACGAGTGTCTGGTTTGGACGTTGA
LOC_Os01g33490
Target Sequence 
GACGCGATTCTCGTCTTTGATCTCGCGACGGGGCAGTGGACGGTGCTGCCCGCTGCGATGCCACTCGGCCTCACGACGGC
ACACCTGTTCGTCTTCGGTGGGCGGCTGTTCTTGGTAGGCGGGGTGGAGAGGTTTGGGGTGGTGGAACGTGTGCTGGTGT
GGAGGCTGGAGGGCTCCGAGGCGGCCGCGGAGTGGACGGAGGTGGGAGCGATGCCGGAGGAGGTGTTCGATGAGCTTGTG
GCTGGTCGGCATGGCAGCTTCTGGCATTTTCAGGCTGCAGACAGAATGGGGATCGTTTGCCTGTACAATGCTGTAGATGG
GAGGCTGGTGATGTTTGATGCGGTGGATGGTGGGTGGACTAGGCTGTCACGAGTGTCTGGTTTGGACGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8942.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis