Browse Element(s) Details


OsAffx.8965.1.S1_at

Description gb:NM_193559.1
DB_XREF= gi:34914201
GEN=OSJNBb0049O23.12
TID=OsAffx.8965.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0049O23.12 (OSJNBb0049O23.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g173605/11retrotransposon protein, putative, unclassified
LOC_Os08g103901/11hypothetical protein
LOC_Os05g094701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17320Os.57327.1.S1_at11/1112+9912704..9919796Prenyl transferase, putative, expressed
LOC_Os12g17320Os.22579.1.S1_at11/1112+9912704..9919796Prenyl transferase, putative, expressed
LOC_Os12g17320Os.38751.1.A1_at4/1112+9912704..9919796Prenyl transferase, putative, expressed
LOC_Os12g17330OsAffx.19714.1.S1_at11/1112+9923165..9923641hypothetical protein
LOC_Os12g17340OsAffx.19715.1.S1_at11/1112+9923982..9926400Leucine Rich Repeat family protein
LOC_Os12g17340OsAffx.21371.1.S1_at2/1112+9923982..9926400Leucine Rich Repeat family protein
LOC_Os12g17350NANA12+9929934..9933040retrotransposon protein, putative, unclassified
LOC_Os12g17360OsAffx.8965.1.S1_at5/1112+9938586..9942053retrotransposon protein, putative, unclassified
LOC_Os12g17360Os.27691.2.S1_x_at1/1112+9938586..9942053retrotransposon protein, putative, unclassified
LOC_Os12g17370OsAffx.19716.1.S1_at10/1112+9944312..9946167hypothetical protein
LOC_Os12g17380OsAffx.31774.1.S1_at11/1112+9951190..9952215hypothetical protein
LOC_Os12g17390OsAffx.31811.2.S1_x_at1/1112+9956829..9958626Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8965.1.S1_at--983--9911Chr01:21904554..21904578 (25 bp)
TACGGCAACAACGTAGCAGTCCTCG
NONE
OsAffx.8965.1.S1_at--881--5851Chr01:21904485..21904509 (25 bp)
GACCAACAGTATAGTGGTCCTCGCA
NONE
OsAffx.8965.1.S1_at--989--5073Chr12:9939164..9939183 (20 bp)
GCACCTCGACATCAATCGGCCGAGA
LOC_Os12g17360
OsAffx.8965.1.S1_at--168--9453Chr11:22827582..22827601 (20 bp)
TCGGCCGAGAGATGAGGCTACTCCT
NONE
OsAffx.8965.1.S1_at--52--6318Chr11:22839241..22839265 (25 bp)
GATGAGGCTACTCCTGGTTCTCGGA
NONE
OsAffx.8965.1.S1_at--1112--8559Chr12:9939125..9939282 (25 bp)
TGGTTCTCGGACCATTTTCGACCAG
LOC_Os12g17360
OsAffx.8965.1.S1_at--767--9378Chr12:9939129..9939286 (25 bp)
TCTCGGACCATTTTCGACCAGCGGT
LOC_Os12g17360
OsAffx.8965.1.S1_at--782--6471Chr01:21904330..21904354 (25 bp)
GATACACCCACTAGCTTTACTTCTC
NONE
OsAffx.8965.1.S1_at--890--85718Chr12:9939248..9939272 (25 bp)
TGGTTGAGTTAAGGCTACACCTGGT
LOC_Os12g17360
OsAffx.8965.1.S1_at--783--64712Chr12:9939292..9939316 (25 bp)
GATACTCCCACTAGCTTTACTTCTC
LOC_Os12g17360
OsAffx.8965.1.S1_at--222--3372Chr08:6093510..6093529 (20 bp)
CACCTGGTTCTCGACTAGAGGAGAG
LOC_Os08g10390
Target Sequence 
TACGGCAACAACGTAGCAGTCCTCGCACCACGACTTCAGATGGTCGAGGCACGACTACGACTGGTCTTCGACCAACAGTA
TAGTGGTCCTCGCACCTCGACATCAATCGGCCGAGAGATGAGGCTACTCCTGGTTCTCGGACCATTTTCGACCAGCGGTG
TAGCGATACACCCACTAGCTTTACTTCTCATGGTTGAGTTAAGGCTACACCTGGTTTTCGACCAGCGGTGTAGCGATACT
CCCACTAGCTTTACTTCTCGTGGTCGAGTTAAGGCTACACCTGGTTCTCGACTAGAGGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis