Browse Element(s) Details


OsAffx.9103.1.S1_at

Description gb:NM_192927.1
DB_XREF= gi:34912937
GEN=OSJNBb0035I14.8
TID=OsAffx.9103.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0035I14.8 (OSJNBb0035I14.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g395801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39540OsAffx.26637.2.S1_x_at10/117+23688822..23690380hypothetical protein
LOC_Os07g39540OsAffx.26637.2.S1_at10/117+23688822..23690380hypothetical protein
LOC_Os07g39540OsAffx.26637.1.S1_x_at3/117+23688822..23690380hypothetical protein
LOC_Os07g39550NANA7+23693488..23693844hypothetical protein
LOC_Os07g39560Os.47058.1.S1_at11/117+23702460..23707234RNA recognition motif family protein, expressed
LOC_Os07g39570OsAffx.5579.1.S1_at11/117+23713141..23713665hypothetical protein
LOC_Os07g39580Os.38395.5.S1_at10/117+23715289..23718608hypothetical protein
LOC_Os07g39580Os.38395.3.S1_x_at7/117+23715289..23718608hypothetical protein
LOC_Os07g39580Os.38395.2.S1_x_at5/117+23715289..23718608hypothetical protein
LOC_Os07g39580OsAffx.9103.1.S1_at1/117+23715289..23718608hypothetical protein
LOC_Os07g39580Os.38395.1.S1_at1/117+23715289..23718608hypothetical protein
LOC_Os07g39590Os.27414.1.S1_at11/117+23720078..23723094Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os07g39590Os.27414.1.S1_a_at10/117+23720078..23723094Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os07g39590Os.27414.2.S1_x_at7/117+23720078..23723094Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os07g39600NANA7+23731554..23733011transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g39610Os.47463.1.S1_x_at2/117+23736072..23739295transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g39610Os.14491.2.S1_x_at1/117+23736072..23739295transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9103.1.S1_at--444--10871Chr01:25512010..25512034 (25 bp)
TTGGCGGCGGTGCTGAGTTCGGCAT
NONE
OsAffx.9103.1.S1_at--130--6071Chr01:25511996..25512020 (25 bp)
GAGTTCGGCATTCGGTGTGGTGGGC
NONE
OsAffx.9103.1.S1_at--1117--4691Chr01:25511937..25511961 (25 bp)
GCGGCGGTCTGGTCTCGGGCGAGAA
NONE
OsAffx.9103.1.S1_at--50--2431Chr01:25511914..25511938 (25 bp)
AAAAGCGGAGGCAGCGCATCCATCG
NONE
OsAffx.9103.1.S1_at--55--8011Chr01:25511908..25511932 (25 bp)
GGAGGCAGCGCATCCATCGTTGCTA
NONE
OsAffx.9103.1.S1_at--358--5071Chr01:25511904..25511928 (25 bp)
GCAGCGCATCCATCGTTGCTAGGGA
NONE
OsAffx.9103.1.S1_at--411--4131Chr01:25511900..25511924 (25 bp)
CGCATCCATCGTTGCTAGGGATGAA
NONE
OsAffx.9103.1.S1_at--888--4431Chr01:25511875..25511899 (25 bp)
GCCATACAGACGTATCGAGAACGTA
NONE
OsAffx.9103.1.S1_at--768--6893Chr02:8291424..8291865 (25 bp)
GTATCGAGAACGTATCCAGAAATAT
NONE
OsAffx.9103.1.S1_at--755--5513Chr06:17446546..17446579 (25 bp)
GAAAATCGCTGATACGTACGGGATA
NONE
OsAffx.9103.1.S1_at--1083--9933Chr07:23716177..23716199 (22 bp)
TACGTATCCAATACGTATCCGTATC
LOC_Os07g39580
Target Sequence 
TTGGCGGCGGTGCTGAGTTCGGCATTCGGTGTGGTGGGCGGTGGCGCCGACGATGGGAAAGTGCCGCGAGCCCGCGGCGG
TCTGGTCTCGGGCGAGAAAAGCGGAGGCAGCGCATCCATCGTTGCTAGGGATGAAGCCATACAGACGTATCGAGAACGTA
TCCAGAAATATTTTAATTATTTGAAAATTGTGAAAATCGCTGATACGTACGGGATACGTATCCAATACGTATCCGTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9103.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis