Browse Element(s) Details


OsAffx.9136.1.S1_x_at

Description gb:NM_192748.1
DB_XREF= gi:34912579
GEN=P0046B10.5
TID=OsAffx.9136.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0046B10.5 (P0046B10.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g136001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13560OsAffx.25367.1.S1_at2/117+7771310..7777719retrotransposon protein, putative, unclassified
LOC_Os07g13560OsAffx.13241.1.S1_at1/117+7771310..7777719retrotransposon protein, putative, unclassified
LOC_Os07g13560Os.51887.1.S1_x_at1/117+7771310..7777719retrotransposon protein, putative, unclassified
LOC_Os07g13570OsAffx.16246.1.S1_at11/117+7783891..7784409hypothetical protein
LOC_Os07g13580Os.24085.1.S1_x_at11/117+7785085..7787103Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os07g13590Os.26753.1.S1_at11/117+7788517..7793327expressed protein
LOC_Os07g13600Os.21424.1.S1_at8/117+7794294..7795285expressed protein
LOC_Os07g13600OsAffx.9136.1.S1_x_at1/117+7794294..7795285expressed protein
LOC_Os07g13610OsAffx.19542.3.S1_x_at3/117+7806884..7810792retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g13634Os.31358.1.S1_at11/117+7813746..7830553UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g13634Os.28943.1.S1_x_at1/117+7813746..7830553UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9136.1.S1_x_at--479--9471Chr01:24521926..24521984 (25 bp)
TCTGTGTGCGGGTCAAGCTCGTCTA
NONE
OsAffx.9136.1.S1_x_at--575--3891Chr01:24521927..24521985 (25 bp)
CTGTGTGCGGGTCAAGCTCGTCTAC
NONE
OsAffx.9136.1.S1_x_at--568--8671Chr01:24521928..24521986 (25 bp)
TGTGTGCGGGTCAAGCTCGTCTACA
NONE
OsAffx.9136.1.S1_x_at--320--8691Chr01:24521930..24521988 (25 bp)
TGTGCGGGTCAAGCTCGTCTACATC
NONE
OsAffx.9136.1.S1_x_at--144--9131Chr01:24521970..24521990 (21 bp)
TGCGGGTCAAGCTCGTCTACATCGG
NONE
OsAffx.9136.1.S1_x_at--630--7691Chr01:24521970..24521993 (24 bp)
GGGTCAAGCTCGTCTACATCGGCTG
NONE
OsAffx.9136.1.S1_x_at--1030--9711Chr01:24521972..24521996 (25 bp)
TCAAGCTCGTCTACATCGGCTGCGG
NONE
OsAffx.9136.1.S1_x_at--543--1591Chr01:24521975..24521999 (25 bp)
AGCTCGTCTACATCGGCTGCGGCGC
NONE
OsAffx.9136.1.S1_x_at--1083--7151Chr01:24521980..24522004 (25 bp)
GTCTACATCGGCTGCGGCGCCGGCA
NONE
OsAffx.9136.1.S1_x_at--912--7191Chr01:24522025..24522049 (25 bp)
GTCGTGCCTCTCTTTACGCTCGTGC
NONE
OsAffx.9136.1.S1_x_at--975--1832Chr01:24522040..24522064 (25 bp)
ACGCTCGTGCCCACCGCCATGTTGA
NONE
Target Sequence 
TCTGTGTGCGGGTCAAGCTCGTCTACATCGGCTGCGGCGCCGGCAACGCCACCGCGTGGGGCGCCGTCGTGCCTCTCTTT
ACGCTCGTGCCCACCGCCATGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9136.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis