Browse Element(s) Details


OsAffx.9280.1.S1_at

Description gb:NM_192113.1
DB_XREF= gi:34911309
GEN=P0519D04.24
TID=OsAffx.9280.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0519D04.24 (P0519D04.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4940011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49370OsAffx.24369.13.S1_s_at11/111+28707937..28710487expressed protein
LOC_Os01g49380Os.50385.1.S1_at11/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49380Os.50385.1.S1_s_at11/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49380Os.45956.1.S1_x_at9/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49380Os.7467.1.S1_at1/111+28710868..28714006hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g49390OsAffx.11529.1.S1_at11/111+28730450..28731541IPP transferase family protein, expressed
LOC_Os01g49400OsAffx.9280.1.S1_at11/111+28733226..28733741hypothetical protein
LOC_Os01g49410Os.20803.1.S1_a_at11/111+28744177..28745448expressed protein
LOC_Os01g49420Os.46500.2.S1_at8/111+28749870..28752013transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g49420Os.46500.1.S1_at5/111+28749870..28752013transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g49430OsAffx.23726.1.S1_x_at11/111+28752662..28754409Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os01g49430OsAffx.23726.2.S1_at11/111+28752662..28754409Heat shock cognate 70 kDa protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9280.1.S1_at--180--231Chr01:28733661..28733685 (25 bp)
ATATTGTTACGATGCTGGCCGTGGC
LOC_Os01g49400
OsAffx.9280.1.S1_at--220--8471Chr01:28733646..28733670 (25 bp)
TGGCCGTGGCCTAGTACATGCACAG
LOC_Os01g49400
OsAffx.9280.1.S1_at--148--2111Chr01:28733631..28733655 (25 bp)
ACATGCACAGACACGCGCAGCTGGA
LOC_Os01g49400
OsAffx.9280.1.S1_at--949--3251Chr01:28733566..28733590 (25 bp)
CAACGTCAATGATGGCCTTTGCCGT
LOC_Os01g49400
OsAffx.9280.1.S1_at--1044--10271Chr01:28733549..28733573 (25 bp)
TTTGCCGTCTCAAGGGCCCTAGAGA
LOC_Os01g49400
OsAffx.9280.1.S1_at--859--1071Chr01:28733537..28733561 (25 bp)
AGGGCCCTAGAGACCAGCAACCGCA
LOC_Os01g49400
OsAffx.9280.1.S1_at--1139--5131Chr01:28733515..28733539 (25 bp)
GCAACAACTACCAAGGCGGCAAGGC
LOC_Os01g49400
OsAffx.9280.1.S1_at--865--1631Chr01:28733330..28733354 (25 bp)
AGCGATGGCGAGAGCCAGCAGCCAT
LOC_Os01g49400
OsAffx.9280.1.S1_at--1142--411Chr01:28733307..28733331 (25 bp)
ATCATCAGGGCCTCGTTGTCTCTGC
LOC_Os01g49400
OsAffx.9280.1.S1_at--37--8731Chr01:28733291..28733315 (25 bp)
TGTCTCTGCATCCTTTTGCGTGCCA
LOC_Os01g49400
OsAffx.9280.1.S1_at--1017--3991Chr01:28733273..28733297 (25 bp)
CGTGCCACGCCTTCAACTGTTCAGG
LOC_Os01g49400
Target Sequence 
ATATTGTTACGATGCTGGCCGTGGCCTAGTACATGCACAGACACGCGCAGCTGGAGAAGGAGAAGCCTCACCCCCCTCGA
GCGCCAAAAACAAGGCAACGTCAATGATGGCCTTTGCCGTCTCAAGGGCCCTAGAGACCAGCAACCGCAACAACTACCAA
GGCGGCAAGGCGGGTTGGGCGAGAGGCGGGAGCAAGTGCATGCATGCAGATGCAGGCGCAGCTCCTCGTCACCGGAGGGG
GCCGCGCGTGCGGCAGCTAGTGCAGGTGCAGGCGCAGCTCGTCGCCGCGCGCACGCGACGCACGCAGCAGCGGCCGGCGC
CCAGGCGGCCCAGCGATGGCGAGAGCCAGCAGCCATCATCAGGGCCTCGTTGTCTCTGCATCCTTTTGCGTGCCACGCCT
TCAACTGTTCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9280.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis