Browse Element(s) Details


OsAffx.9390.1.S1_at

Description tigr:9629.m05654
TID=OsAffx.9390.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Plastocyanin-like domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5769011/11Plastocyanin-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57650Os.37921.2.S1_at11/111+33656401..33658783zinc finger family protein, putative, expressed
LOC_Os01g57660OsAffx.23827.1.S1_x_at11/111+33668491..33668869hypothetical protein
LOC_Os01g57660OsAffx.23827.1.S1_at11/111+33668491..33668869hypothetical protein
LOC_Os01g57670OsAffx.9512.1.S1_x_at11/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57670OsAffx.9512.1.S1_at10/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57670OsAffx.8455.1.S1_at2/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57670OsAffx.12338.1.S1_at1/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57680NANA1+33674791..33675153hypothetical protein
LOC_Os01g57690OsAffx.9390.1.S1_at11/111+33677093..33677974Plastocyanin-like domain containing protein, expressed
LOC_Os01g57700OsAffx.23829.1.S1_at4/111+33686340..33688642expressed protein
LOC_Os01g57710Os.38205.1.S1_at11/111+33691225..33694212expressed protein
LOC_Os01g57720Os.22812.1.S1_a_at11/111+33695829..33701469expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9390.1.S1_at--985--8051Chr01:33677665..33677827 (25 bp)
GGAGACACGCTAACATTCAAGTACA
LOC_Os01g57690
OsAffx.9390.1.S1_at--736--2831Chr01:33677647..33677671 (25 bp)
AAGTACAGCTCGTACCACAACGTCG
LOC_Os01g57690
OsAffx.9390.1.S1_at--1099--3291Chr01:33677632..33677656 (25 bp)
CACAACGTCGTCGAAGTGACCAAAG
LOC_Os01g57690
OsAffx.9390.1.S1_at--423--5791Chr01:33677608..33677632 (25 bp)
GACGACTACGAAGCGTGCTCCGCGA
LOC_Os01g57690
OsAffx.9390.1.S1_at--310--8191Chr01:33677526..33677550 (25 bp)
GGAAGCGCTATTTCATCTGCGGCGC
LOC_Os01g57690
OsAffx.9390.1.S1_at--767--10571Chr01:33677408..33677432 (25 bp)
TTCTCCACGACACAAGAGGCGGACT
LOC_Os01g57690
OsAffx.9390.1.S1_at--429--1631Chr01:33677357..33677381 (25 bp)
AGCGCAAGCGCCAGTATGGTCGCCG
LOC_Os01g57690
OsAffx.9390.1.S1_at--801--6231Chr01:33677246..33677270 (25 bp)
GATGGCTCCCACTGTGCAGTCCGTG
LOC_Os01g57690
OsAffx.9390.1.S1_at--1115--5011Chr01:33677231..33677255 (25 bp)
GCAGTCCGTGGAGGCAGATTTTCCG
LOC_Os01g57690
OsAffx.9390.1.S1_at--1057--10391Chr01:33677147..33677171 (25 bp)
TTCTGCCGTCGTGCGTCAAAAGTGG
LOC_Os01g57690
OsAffx.9390.1.S1_at--298--5891Chr01:33677123..33677147 (25 bp)
GAGCGATGTCATAGTCGGCCTAGTA
LOC_Os01g57690
Target Sequence 
GGAGACACGCTAACATTCAAGTACAGCTCGTACCACAACGTCGTCGAAGTGACCAAAGACGACTACGAAGCGTGCTCCGC
GACCAGCCCTGTCTCCGCCGACAGCAGCGGCAGCACCACCATCGTGCTCACGACGCCGGGGAAGCGCTATTTCATCTGCG
GCGCGCCGGGGCACTGCCAGTCCGGAATGAAGCTGGTGGTGGACGTCGCCGACCGCCCCGCACCCGCAACGCCCAGCCCA
CCGCCGTTGCTGCCACCTTCTCCACGACACAAGAGGCGGACTGCACCGGCGCCAATGCCGTTGCCGCCAGCGCAAGCGCC
AGTATGGTCGCCGGCACCAGCACCCGCGGCGACGCAGCGAAGGCATTCGGGGCACAAGAAGCACAGGAGCAGGCACCTTC
CGCCTAAACCGGCGCCGGCGATGGCTCCCACTGTGCAGTCCGTGGAGGCAGATTTTCCGGCGGCGGCTTTCGCACCGATG
TCCTCACCACCTCCCCCGCCGCCGATGTCGTCGGACGCTTCTGCCGTCGTGCGTCAAAAGTGGAGCGATGTCATAGTCGG
CCTAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9390.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis