Browse Element(s) Details


OsAffx.9512.1.S1_at

Description gb:NM_190831.1
DB_XREF= gi:34908745
GEN=P0415A04.5
TID=OsAffx.9512.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) purple acid phosphatase-like protein (P0415A04.5), mRNA.
PROD=purple acid phosphatase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5767010/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57630Os.22276.1.S1_a_at11/111+33644887..33649756pentatricopeptide, putative, expressed
LOC_Os01g57650Os.37921.2.S1_at11/111+33656401..33658783zinc finger family protein, putative, expressed
LOC_Os01g57660OsAffx.23827.1.S1_x_at11/111+33668491..33668869hypothetical protein
LOC_Os01g57660OsAffx.23827.1.S1_at11/111+33668491..33668869hypothetical protein
LOC_Os01g57670OsAffx.9512.1.S1_x_at11/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57670OsAffx.9512.1.S1_at10/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57670OsAffx.8455.1.S1_at2/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57670OsAffx.12338.1.S1_at1/111+33670503..33673718transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g57680NANA1+33674791..33675153hypothetical protein
LOC_Os01g57690OsAffx.9390.1.S1_at11/111+33677093..33677974Plastocyanin-like domain containing protein, expressed
LOC_Os01g57700OsAffx.23829.1.S1_at4/111+33686340..33688642expressed protein
LOC_Os01g57710Os.38205.1.S1_at11/111+33691225..33694212expressed protein
LOC_Os01g57720Os.22812.1.S1_a_at11/111+33695829..33701469expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9512.1.S1_at--1160--5051Chr01:33673341..33673364 (24 bp)
GCACGAAGCCCTTCTGGTACTCCGA
LOC_Os01g57670
OsAffx.9512.1.S1_at--718--1831Chr01:33673343..33673364 (22 bp)
ACGAAGCCCTTCTGGTACTCCGAGG
LOC_Os01g57670
OsAffx.9512.1.S1_at--445--5411Chr01:33673345..33673466 (25 bp)
GAAGCCCTTCTGGTACTCCGAGGAG
LOC_Os01g57670
OsAffx.9512.1.S1_at--508--2671Chr01:33673346..33673470 (25 bp)
AAGCCCTTCTGGTACTCCGAGGAGC
LOC_Os01g57670
OsAffx.9512.1.S1_at--270--4551Chr01:33673348..33673472 (25 bp)
GCCCTTCTGGTACTCCGAGGAGCTT
LOC_Os01g57670
OsAffx.9512.1.S1_at--389--10611Chr01:33673352..33673476 (25 bp)
TTCTGGTACTCCGAGGAGCTTGCCA
LOC_Os01g57670
OsAffx.9512.1.S1_at--1162--4051Chr01:33673464..33673487 (24 bp)
CGAGGAGCTTGCCACCCGCATCGTG
LOC_Os01g57670
OsAffx.9512.1.S1_at--848--971Chr01:33673465..33673489 (25 bp)
AGGAGCTTGCCACCCGCATCGTGCT
LOC_Os01g57670
OsAffx.9512.1.S1_at--274--10691Chr01:33673471..33673495 (25 bp)
TTGCCACCCGCATCGTGCTCATGCA
LOC_Os01g57670
OsAffx.9512.1.S1_at--1147--4071Chr01:33673619..33673643 (25 bp)
CGAGCGAAGCCGCAGGTTCGCCAAC
LOC_Os01g57670
OsAffx.9512.1.S1_at--1119--1831Chr01:33673909..33673933 (25 bp)
ACGCTCGGCCGTCGCTGTGACGCCA
NONE
Target Sequence 
GCACGAAGCCCTTCTGGTACTCCGAGGAGCTTGCCACCCGCATCGTGCTCATGCACTCGCCGTGGTACAACAGCAACAAC
TACCACTACATGGAGGGGGAGATGATGCGTGTCCAGTTCGAGCGGTGGCTCGTCGACACCAAGGTGGACCTGGTGCTCGC
CGCCCACGTCCACTCGTACGAGCGAAGCCGCAGGTTCGCCAACATCAACTACGACATCGTCAACCGCGCCCGCCGCCGCT
CACCCAGCAGCGCCGGCAGCCGCCGCCGCAGTCGCCTCCTCTCGGCCGTCGCTGCGACGCCGCCGTCCGCCACCCGTCCC
CGTGCGCCGCGCCCGCAGGGCCGCAGCCGCCTACGCTCGGCCGTCGCTGTGACGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9512.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis