Browse Element(s) Details


OsAffx.9572.1.S1_at

Description gb:NM_190425.1
DB_XREF= gi:34907933
GEN=B1088C09.15
TID=OsAffx.9572.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1088C09.15 (B1088C09.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g275201/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27480Os.54354.1.S1_at10/113+15742324..15746072Serine carboxypeptidase family protein, expressed
LOC_Os03g27484NANA3+15749223..15751936hypothetical protein
LOC_Os03g27490OsAffx.13076.1.S1_at11/113+15752953..15754866hypothetical protein
LOC_Os03g27490OsAffx.29308.1.S1_x_at1/113+15752953..15754866hypothetical protein
LOC_Os03g27490OsAffx.29823.1.S1_at1/113+15752953..15754866hypothetical protein
LOC_Os03g27490OsAffx.29823.1.S1_x_at1/113+15752953..15754866hypothetical protein
LOC_Os03g27510OsAffx.3344.1.S1_at11/113+15758873..15763677serine carboxypeptidase S10 family protein, putative
LOC_Os03g27520OsAffx.9572.1.S1_at1/113+15765275..15767372transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27530OsAffx.25255.1.S1_at10/113+15768495..15775420Retinoid-inducible serine carboxypeptidase precursor, putative
LOC_Os03g27540NANA3+15776756..15779725transposon protein, putative, Pong sub-class, expressed
LOC_Os03g27550NANA3+15780048..15780673serine carboxypeptidase S10 family protein, putative
LOC_Os03g27560OsAffx.10931.3.S1_at11/113+15785028..15785884hypothetical protein
LOC_Os03g27570OsAffx.13079.1.S1_at9/113+15789001..15789291hypothetical protein
LOC_Os03g27580OsAffx.13079.1.S1_at11/113+15790978..15791835hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9572.1.S1_at--1108--4433Chr09:22393645..22393669 (25 bp)
GCCATTGATGACGATCGAGTCGCCG
NONE
OsAffx.9572.1.S1_at--224--6393Chr09:22393657..22393680 (24 bp)
GATCGAGTCGCCGATGGATCACGAG
NONE
OsAffx.9572.1.S1_at--895--7952Chr03:7395505..7395529 (25 bp)
GGATCACGAGGCAGCTGGCGACCTT
NONE
OsAffx.9572.1.S1_at--856--8473Chr09:22393687..22393711 (25 bp)
TGGCGACCTTCATGCTGGCTTATAC
NONE
OsAffx.9572.1.S1_at--1016--8291Chr01:35796595..35796619 (25 bp)
GGCTTATACCTCGATCGATCTGTAA
NONE
OsAffx.9572.1.S1_at--911--7733Chr09:22393830..22393854 (25 bp)
GGTGGTGCAAAAGCCGATCATGTCG
NONE
OsAffx.9572.1.S1_at--679--417Chr11:11802864..11802885 (22 bp)
ATCATGTCGATGGAATCACGCCGCC
NONE
OsAffx.9572.1.S1_at--818--553Chr09:22393962..22393986 (25 bp)
ATCCTTGCGGCCTTGCCGGTGGATC
NONE
OsAffx.9572.1.S1_at--919--2652Chr03:7395862..7395886 (25 bp)
AAGCCAGCCACCCTTGCCGATGTAT
NONE
OsAffx.9572.1.S1_at--737--2233Chr09:22394072..22394096 (25 bp)
AAATTGCCCTTATATCGGATCGGTC
NONE
OsAffx.9572.1.S1_at--78--493Chr09:22394085..22394109 (25 bp)
ATCGGATCGGTCTGTTGATTTTCTG
NONE
Target Sequence 
GCCATTGATGACGATCGAGTCGCCGATGGATCACGAGGCAGCTGGCGACCTTCATGCTGGCTTATACCTCGATCGATCTG
TAAGAAAAAGAAAGAGAGAATCCTTGATCAATCTGCAAGAAATACAAAACGAGAGAAAACGGGATGGACATACCAGAATC
AATCACCTGGGAATATCCAAATAATGGTGGTGCAAAAGCCGATCATGTCGATGGAATCACGCCGCCGGCACTCCGGCAGG
CGGACGAGCTGCATGGGCTTGACGATGATGGATTTCTGCTGTGTCGTTGTCCGCTACTCGCCGCCGTGGCCTGAGCCATC
CTTGCGGCCTTGCCGGTGGATCGCGCGCATCGCCGTCGTTGTCTGCTACTCGCCGCCGTGGCCCAAGCCAGCCACCCTTG
CCGATGTATCGCCTCGCCGTCACCTCCAAATTGCCCTTATATCGGATCGGTCTGTTGATTTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9572.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis