Browse Element(s) Details


OsAffx.985.1.S1_x_at

Description gb:NM_191040.1
DB_XREF= gi:34909163
GEN=P0468B07.25
TID=OsAffx.985.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) receptor protein kinase-like (P0468B07.25), mRNA.
PROD=receptor protein kinase-like
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5958011/11Protein kinase domain containing protein
LOC_Os01g595701/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59550OsAffx.985.7.S1_x_at11/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59550OsAffx.985.2.S1_at11/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59550OsAffx.985.3.S1_x_at2/111+34754561..34763164Protein kinase domain containing protein, expressed
LOC_Os01g59560OsAffx.985.3.S1_x_at11/111+34764111..34771226Protein kinase domain containing protein, expressed
LOC_Os01g59560OsAffx.985.7.S1_x_at2/111+34764111..34771226Protein kinase domain containing protein, expressed
LOC_Os01g59570Os.18744.1.S1_at11/111+34772599..34780847Protein kinase domain containing protein, expressed
LOC_Os01g59570OsAffx.985.1.S1_x_at1/111+34772599..34780847Protein kinase domain containing protein, expressed
LOC_Os01g59570Os.53116.1.S1_at1/111+34772599..34780847Protein kinase domain containing protein, expressed
LOC_Os01g59580OsAffx.985.1.S1_x_at11/111+34785572..34792859Protein kinase domain containing protein
LOC_Os01g59589OsAffx.21659.1.S1_at2/111+34794308..34794507NA
LOC_Os01g59600Os.3706.1.S1_at11/111+34797869..34802345Proteasome subunit alpha type 3, putative, expressed
LOC_Os01g59610NANA1+34803170..34803795serine protease inhibitor, Kazal-type family protein, putative, expressed
LOC_Os01g59620Os.35901.1.S1_at10/111+34807419..34811830YDG/SRA domain containing protein, expressed
LOC_Os01g59630Os.23590.1.A1_at10/111+34812128..34816646Exostosin family protein, expressed
LOC_Os01g59640OsAffx.9467.1.S1_at11/111+34817654..34819545No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.985.1.S1_x_at--597--252Chr01:34786141..34786165 (25 bp)
ATATCTGATTTTGGGCTTTCACGGG
LOC_Os01g59580
OsAffx.985.1.S1_x_at--846--7571Chr01:34786119..34786143 (25 bp)
GGGCTTTTAATGCAGCTCACACGCA
LOC_Os01g59580
OsAffx.985.1.S1_x_at--491--10192Chr09:10996215..10996715 (25 bp)
TATATCTACTGTTGTTGCCGGCACC
NONE
OsAffx.985.1.S1_x_at--612--3591Chr01:34786069..34786093 (25 bp)
CTTGGTTACCTTGACCCTGAGTATC
LOC_Os01g59580
OsAffx.985.1.S1_x_at--58--9091Chr01:34786043..34786067 (25 bp)
TGCTACTTTCCAACTTACCGTTAAG
LOC_Os01g59580
OsAffx.985.1.S1_x_at--151--10871Chr01:34785988..34786012 (25 bp)
TTGGAGATTGTCACTGGTCAACCCC
LOC_Os01g59580
OsAffx.985.1.S1_x_at--1067--2611Chr01:34785944..34785968 (25 bp)
AACCGTCCACTTGCCAAATTGGGTG
LOC_Os01g59580
OsAffx.985.1.S1_x_at--174--10051Chr01:34785867..34785891 (25 bp)
TAGATCAATACGATGCCACTCACCT
LOC_Os01g59580
OsAffx.985.1.S1_x_at--980--1371Chr01:34785830..34785854 (25 bp)
AGACCTTGCAATGAACTGCCTTGAA
LOC_Os01g59580
OsAffx.985.1.S1_x_at--405--7971Chr01:34785683..34785707 (25 bp)
GGATGCAGACATTCCACGGCAGTTC
LOC_Os01g59580
OsAffx.985.1.S1_x_at--812--1931Chr01:34785668..34785692 (25 bp)
ACGGCAGTTCCACTTGATGATTTCT
LOC_Os01g59580
Target Sequence 
ATATCTGATTTTGGGCTTTCACGGGCTTTTAATGCAGCTCACACGCATATATCTACTGTTGTTGCCGGCACCCTTGGTTA
CCTTGACCCTGAGTATCATGCTACTTTCCAACTTACCGTTAAGACAGACGTTTACAGTTTTGGAATTGTCCTCTTGGAGA
TTGTCACTGGTCAACCCCCAGTATTTATGGATCCCCAAACCGTCCACTTGCCAAATTGGGTGCGGCAAAAGATTGATAAG
GGAAGCATCCACGATGTTGTGGACAAGAAACTGTTAGATCAATACGATGCCACTCACCTGCAAACTGTGATAGACCTTGC
AATGAACTGCCTTGAAAACACATCAATTGACAGGCCAAGCATGACTGAGGTTGTTTCTGTGCTTAAGGTGTTGTTTACGG
TGGCTATTTCAAGTGAGAAACGATCGGTTACATCAACCCCTCAAGAGAAGAACGTCATGGATGCAGACATTCCACGGCAG
TTCCACTTGATGATTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.985.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis