Browse Element(s) Details


OsAffx.9910.1.S1_x_at

Description tigr:9629.m01175
TID=OsAffx.9910.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1214011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12110Os.3496.1.S1_at11/111+6587702..6588938expressed protein
LOC_Os01g12120NANA1+6603323..6604041hypothetical protein
LOC_Os01g12130Os.27838.1.S1_at11/111+6609156..6610707nodulin MtN3 family protein, putative, expressed
LOC_Os01g12140OsAffx.9910.1.S1_x_at11/111+6612205..6612570hypothetical protein
LOC_Os01g12150OsAffx.32171.1.S1_x_at11/111+6613534..6615625hypothetical protein
LOC_Os01g12150OsAffx.32171.2.S1_at7/111+6613534..6615625hypothetical protein
LOC_Os01g12150Os.49487.1.S1_at1/111+6613534..6615625hypothetical protein
LOC_Os01g12160Os.34283.1.S1_at11/111+6622842..6627264GH3 auxin-responsive promoter family protein, expressed
LOC_Os01g12160Os.34283.2.S1_x_at11/111+6622842..6627264GH3 auxin-responsive promoter family protein, expressed
LOC_Os01g12170OsAffx.380.1.S1_at4/111+6630520..6634401retrotransposon protein, putative, unclassified
LOC_Os01g12170OsAffx.29576.2.S1_x_at1/111+6630520..6634401retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9910.1.S1_x_at--400--4151Chr01:6612263..6612287 (25 bp)
CGCGGGAGCCGTCGCTGCAGGAGCA
LOC_Os01g12140
OsAffx.9910.1.S1_x_at--703--8351Chr01:6612294..6612318 (25 bp)
GGCGGCGTCGGAGCGCGCCAGCGTG
LOC_Os01g12140
OsAffx.9910.1.S1_x_at--1152--7771Chr01:6612483..6612507 (25 bp)
GGTGCGGGCGGTGGACGAGGAGATC
LOC_Os01g12140
OsAffx.9910.1.S1_x_at--921--6031Chr01:6612502..6612526 (25 bp)
GAGATCGCGGCCATGGACCAGCACA
LOC_Os01g12140
OsAffx.9910.1.S1_x_at--59--1291Chr01:6612503..6612527 (25 bp)
AGATCGCGGCCATGGACCAGCACAT
LOC_Os01g12140
OsAffx.9910.1.S1_x_at--153--9351Chr01:6612506..6612530 (25 bp)
TCGCGGCCATGGACCAGCACATCAG
LOC_Os01g12140
OsAffx.9910.1.S1_x_at--158--8451Chr01:6612510..6612534 (25 bp)
GGCCATGGACCAGCACATCAGGGTG
LOC_Os01g12140
OsAffx.9910.1.S1_x_at--746--4331Chr01:6612512..6612536 (25 bp)
CCATGGACCAGCACATCAGGGTGCT
LOC_Os01g12140
OsAffx.9910.1.S1_x_at--982--3491Chr01:6612513..6612537 (25 bp)
CATGGACCAGCACATCAGGGTGCTC
LOC_Os01g12140
OsAffx.9910.1.S1_x_at--899--831Chr01:6612514..6612538 (25 bp)
ATGGACCAGCACATCAGGGTGCTCC
LOC_Os01g12140
OsAffx.9910.1.S1_x_at--464--8091Chr01:6612516..6612540 (25 bp)
GGACCAGCACATCAGGGTGCTCCAG
LOC_Os01g12140
Target Sequence 
CGCGGGAGCCGTCGCTGCAGGAGCAGCTGCTGGCGGCGTCGGAGCGCGCCAGCGTGGAGCGGCTGCGGGAGCGCGCGGGG
GCGCTGCAGCGGGAGCTGGACGCCGTGGCGGGGGAGACGGAGGAGGCCGAGGCGGCGGCGCGGCGCGCCGAGGCGCGCGC
GGCGGGCGCGGGCGCCGCGCTGCGCGCCGCGGCGGGGGAGAGGGAGGCGCACGAGGCGAAGGTGCGGGCGGTGGACGAGG
AGATCGCGGCCATGGACCAGCACATCAGGGTGCTCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9910.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis