Browse Element(s) Details


OsAffx.9930.1.S1_at

Description gb:NM_188400.1
DB_XREF= gi:34903883
TID=OsAffx.9930.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g113108/11transposon protein, putative, Pong sub-class
LOC_Os04g475006/11transposon protein, putative, Pong sub-class
LOC_Os07g128806/11transposon protein, putative, Pong sub-class
LOC_Os04g348106/11transposon protein, putative, Pong sub-class
LOC_Os02g454005/11transposon protein, putative, Pong sub-class
LOC_Os07g276605/11transposon protein, putative, Pong sub-class
LOC_Os02g284204/11transposon protein, putative, Pong sub-class
LOC_Os03g366843/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11280Os.48011.1.S1_x_at11/111+6034256..6035794cytochrome P450 family protein, putative
LOC_Os01g11280Os.48011.1.S1_at11/111+6034256..6035794cytochrome P450 family protein, putative
LOC_Os01g11289NANA1+6039507..6039778NA
LOC_Os01g11300Os.43516.1.S1_at11/111+6054242..6055831cytochrome P450 family protein, putative, expressed
LOC_Os01g11300Os.48011.1.S1_x_at2/111+6054242..6055831cytochrome P450 family protein, putative, expressed
LOC_Os01g11310OsAffx.9930.1.S1_at8/111+6060281..6060736transposon protein, putative, Pong sub-class
LOC_Os01g11320NANA1+6062485..6063280transposon protein, putative, Pong sub-class
LOC_Os01g11330OsAffx.26503.1.S1_at1/111+6065600..6068538retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g11340Os.37093.1.S1_at11/111+6073533..6075417cytochrome P450 family protein, putative, expressed
LOC_Os01g11340Os.48011.1.S1_x_at3/111+6073533..6075417cytochrome P450 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9930.1.S1_at--490--7891Chr01:6060816..6060840 (25 bp)
GGTTCCCAGGGATGCTAGGTTCTAT
NONE
OsAffx.9930.1.S1_at--445--3478Chr04:20915405..20915429 (25 bp)
CAGGGCATGTGGATGGGCCAACCAT
LOC_Os04g34810
OsAffx.9930.1.S1_at--603--8457Chr04:20915420..20915444 (25 bp)
GGCCAACCATGATTCTTGAAGCTGT
LOC_Os04g34810
OsAffx.9930.1.S1_at--291--10835Chr04:20915466..20915490 (25 bp)
TTGGCATTCCTTCTTTGGACTACCA
LOC_Os04g34810
OsAffx.9930.1.S1_at--188--8131Chr01:6060658..6060682 (25 bp)
GGACTACCAGGTTTTCTTAATGATA
LOC_Os01g11310
OsAffx.9930.1.S1_at--190--6457Chr04:20915527..20915546 (20 bp)
GATCACCACTCTTTCAAAGGCTTAC
LOC_Os04g34810
OsAffx.9930.1.S1_at--711--2934Chr04:20915538..20915562 (25 bp)
AAGGCTTACATCAGGGACAGCTCCA
LOC_Os04g34810
OsAffx.9930.1.S1_at--636--7559Chr04:20915636..20915660 (25 bp)
GGGCCACTTTTGTGAAGACCATTTC
LOC_Os04g34810
OsAffx.9930.1.S1_at--1055--5833Chr07:7390248..7390271 (24 bp)
GACCATTTCCAATCCACAAGGTAAT
LOC_Os07g12880
OsAffx.9930.1.S1_at--415--2671Chr01:6060393..6060417 (25 bp)
AAGCCCGCTTTGCAATGGTCAGAGG
LOC_Os01g11310
OsAffx.9930.1.S1_at--432--8591Chr01:6060378..6060402 (25 bp)
TGGTCAGAGGCCCTGCTAGATTTTG
LOC_Os01g11310
Target Sequence 
GGTTCCCAGGGATGCTAGGTTCTATTGACTGTATGCATTGGAGGTGGAAGAATTGCCCAACAGGCTGGAAAGGACAATAC
TCAGGGCATGTGGATGGGCCAACCATGATTCTTGAAGCTGTTGCATCTAAAGATTTGTGGATTTGGCATTCCTTCTTTGG
ACTACCAGGTTTTCTTAATGATATCAATGTACTACAGAGATCACCACTCTTTCAAAGGCTTACATCAGGGACAGCTCCAG
AGTTGGAGTTTATGGTGAATGGAAAGAAATACACCATTGGTTACTATCTTGCTGATGGCATATACCCTTCTCGGGCCACT
TTTGTGAAGACCATTTCCAATCCACAAGGTAATAAGAGAATACATTATGCAAAAGTTCAAGAAGGAGTGAGAAAGGATGT
TGAAAGAACATTTGGTGTTCTACAAGCCCGCTTTGCAATGGTCAGAGGCCCTGCTAGATTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9930.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis