Browse Element(s) Details


OsAffx.9938.1.S1_at

Description gb:NM_188372.1
DB_XREF= gi:34903827
GEN=OSJNBa0016I09.27
TID=OsAffx.9938.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0016I09.27 (OSJNBa0016I09.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1108011/11Transposable element protein, putative, Retrotrans_gag
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11040Os.28458.1.S1_at11/111+5887407..5895026WH2 motif family protein, expressed
LOC_Os01g11054Os.27513.1.A1_a_at11/111+5896363..5906375Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os01g11054OsAffx.10695.1.S1_at1/111+5896363..5906375Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os01g11070Os.17532.1.S1_at11/111+5908305..5913581curculin-like lectin family protein, putative, expressed
LOC_Os01g11070Os.17532.2.S1_at11/111+5908305..5913581curculin-like lectin family protein, putative, expressed
LOC_Os01g11070Os.17532.2.S1_s_at11/111+5908305..5913581curculin-like lectin family protein, putative, expressed
LOC_Os01g11080OsAffx.9938.1.S1_at11/111+5914965..5916014Transposable element protein, putative, Retrotrans_gag
LOC_Os01g11110Os.11930.1.S1_at11/111+5918561..593091114-3-3, putative, expressed
LOC_Os01g11120Os.27489.2.A1_x_at11/111+5931377..5936318RNA-binding protein, putative, expressed
LOC_Os01g11120Os.27489.1.A1_at10/111+5931377..5936318RNA-binding protein, putative, expressed
LOC_Os01g11120Os.27489.2.A1_at10/111+5931377..5936318RNA-binding protein, putative, expressed
LOC_Os01g11120Os.11302.1.S1_at1/111+5931377..5936318RNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9938.1.S1_at--976--6191Chr01:5915539..5915563 (25 bp)
GAGGCGCGGACGTCCCCGAATCGTT
LOC_Os01g11080
OsAffx.9938.1.S1_at--992--5251Chr01:5915556..5915580 (25 bp)
GAATCGTTCCTCAAGTCCGCGTTCG
LOC_Os01g11080
OsAffx.9938.1.S1_at--842--1231Chr01:5915599..5915623 (25 bp)
AGTTCCACGACTGGGTGGCGCCGCA
LOC_Os01g11080
OsAffx.9938.1.S1_at--944--4531Chr01:5915715..5915739 (25 bp)
GCCCGGATGACCAAGTGCGAGTTCT
LOC_Os01g11080
OsAffx.9938.1.S1_at--562--691Chr01:5915721..5915745 (25 bp)
ATGACCAAGTGCGAGTTCTGCGACA
LOC_Os01g11080
OsAffx.9938.1.S1_at--873--4611Chr01:5915731..5915755 (25 bp)
GCGAGTTCTGCGACACGGAAGGCCA
LOC_Os01g11080
OsAffx.9938.1.S1_at--259--9491Chr01:5915737..5915761 (25 bp)
TCTGCGACACGGAAGGCCACGAGGA
LOC_Os01g11080
OsAffx.9938.1.S1_at--831--4351Chr01:5915836..5915860 (25 bp)
CCAGCGCCACCATGGTAGTGGAGGA
LOC_Os01g11080
OsAffx.9938.1.S1_at--672--9431Chr01:5915905..5915929 (25 bp)
TCGGGAGCACGGTGAGCACGCGATC
LOC_Os01g11080
OsAffx.9938.1.S1_at--782--4571Chr01:5915931..5915955 (25 bp)
GCGCAGTGCCAGTGCCGGAAGCATC
LOC_Os01g11080
OsAffx.9938.1.S1_at--184--1131Chr01:5915941..5915965 (25 bp)
AGTGCCGGAAGCATCAGTGCTGGAA
LOC_Os01g11080
Target Sequence 
GAGGCGCGGACGTCCCCGAATCGTTCCTCAAGTCCGCGTTCGTCGACGGCCTCCTCCCCGAGTTCCACGACTGGGTGGCG
CCGCAGCGTCCGGAGGCGCTGGACGTGGCCGTGGCGCTGGCCCTGAGCTGGGAGCGCGCCGAGAGCGTGCGCGAGGCGCG
GCGCGCGGCGAAGGCGGCCCGGATGACCAAGTGCGAGTTCTGCGACACGGAAGGCCACGAGGAGGCGCAGTGCGAGACGC
GGAGGAGGATGAGGGCGTTGTGCCTGAGGAGGAGCAGCAGCAGCAGGAGAGGAGGCGCCAGCGCCACCATGGTAGTGGAG
GAGGCGGCGGAGGAGGAGGGGGGCGGGAGCATGAGGTTCGCGCGGCTCGGGAGCACGGTGAGCACGCGATCGGCGCAGTG
CCAGTGCCGGAAGCATCAGTGCTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis