Browse Element(s) Details


Os.10016.1.S1_a_at

Description gb:AK099449.1
DB_XREF= gi:32984658
TID=Os.10016.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10016 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0512C01.29 (P0512C01.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022F08, full insert sequence.
FL= gb:AK099449.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5573010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55660NANA1+32392337..32396694retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g55670NANA1+32397767..32398923expressed protein
LOC_Os01g55690Os.22346.1.S1_x_at11/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55690OsAffx.27508.71.S1_s_at11/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55690Os.22346.2.S1_x_at11/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55690Os.12807.2.S1_x_at4/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55690Os.16515.1.S1_x_at2/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55700NANA1+32406246..32409194NLI interacting factor-like phosphatase family protein
LOC_Os01g55710Os.54916.1.S1_at1/111+32409864..32410541hypothetical protein
LOC_Os01g55720Os.16746.1.S1_at11/111+32415117..32415884expressed protein
LOC_Os01g55720Os.16746.1.S1_x_at11/111+32415117..32415884expressed protein
LOC_Os01g55730Os.10016.1.S1_a_at10/111+32418474..32420989expressed protein
LOC_Os01g55740Os.42060.1.S1_at10/111+32421251..32425563Rhomboid family protein, expressed
LOC_Os01g55750Os.27829.1.S1_at11/111+32433690..32436591TCP family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10016.1.S1_a_at--723--1651Chr01:32420630..32420654 (25 bp)
AGCGCTGCAAGGACCAAATCGACTG
LOC_Os01g55730
Os.10016.1.S1_a_at--845--7031Chr01:32420494..32420518 (25 bp)
GTACAAGCCTATCGTTGAGCCGGCA
LOC_Os01g55730
Os.10016.1.S1_a_at--951--2551Chr01:32420344..32420368 (25 bp)
AACGGAACGTCCGACAGGCGTATCA
LOC_Os01g55730
Os.10016.1.S1_a_at--1129--891Chr01:32420330..32420353 (24 bp)
AGGCGTATCACAACGTCTGCACGGC
LOC_Os01g55730
Os.10016.1.S1_a_at--111--1931Chr01:32420221..32420242 (22 bp)
ACGGCTTGCTCCAAGGACCTTGGGA
LOC_Os01g55730
Os.10016.1.S1_a_at--861--8631Chr01:32420201..32420225 (25 bp)
TGGGATTTGCGCGAAGTGCTGCACT
LOC_Os01g55730
Os.10016.1.S1_a_at--418--7291Chr01:32420186..32420210 (25 bp)
GTGCTGCACTTGTGTTAAAGCGCTT
LOC_Os01g55730
Os.10016.1.S1_a_at--921--9831Chr01:32420067..32420195 (25 bp)
TAAAGCGCTTGTCGGAAGGGATCTT
LOC_Os01g55730
Os.10016.1.S1_a_at--894--2171NONE
ACACTTCTTCGCCTTATGAACAAAG
NONE
Os.10016.1.S1_a_at--561--5951Chr01:32418822..32418846 (25 bp)
GAGAGCGGACCGTCGGTTCCAAAGA
LOC_Os01g55730
Os.10016.1.S1_a_at--616--1211Chr01:32418567..32418591 (25 bp)
AGTTTTGGCAGATATATTTCCGTCT
LOC_Os01g55730
Target Sequence 
AGCGCTGCAAGGACCAAATCGACTGGAAGAGAAGATACGGGAAGTACAAGCCTATCGTTGAGCCGGCAAAATGTCAGAAG
TGTGGGAAACGGAACGTCCGACAGGCGTATCACAACGTCTGCACGGCTTGCTCCAAGGACCTTGGGATTTGCGCGAAGTG
CTGCACTTGTGTTAAAGCGCTTGTCGGAAGGGATCTTAGTGAACAGGAGAGTGAGCGCAAGGAACTAGAGGAGGCCATAA
GNGGTGCTAGGGAGAGGGAGAGGCGCACACTTCTTCGCCTTATGAACAAAGGTGGCGGGGAGAGCGGACCGTCGGTTCCA
AAGATTGCTGACAGAAGTCGTGAAGGGGACATTTNNCCTGNTGNATNCCTTGACGANTATGCTGAACAAGCTAGACAGNN
AGATGATTCAGATGANGAAGAGGCCAGGGATTTTGTAGAAGATTAATTTTAGAACTCAGAAACCTTTTCTTTTGCAAAAG
GATTTATATAGCCTTATGTGGTGATTTACATTACATGGTGGGTAATCCCACCCACTGCGGAAAACAAGTGTATTAGTTTT
GGCAGATATATTTCCGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10016.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis