Browse Element(s) Details


Os.16746.1.S1_x_at

Description gb:BI804223
DB_XREF= gi:16576941
DB_XREF=H131D06
CLONE=H131D06
TID=Os.16746.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.16746 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0512C01.28 (P0512C01.28), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5572011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55660NANA1+32392337..32396694retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g55670NANA1+32397767..32398923expressed protein
LOC_Os01g55690Os.22346.1.S1_x_at11/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55690OsAffx.27508.71.S1_s_at11/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55690Os.22346.2.S1_x_at11/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55690Os.12807.2.S1_x_at4/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55690Os.16515.1.S1_x_at2/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55700NANA1+32406246..32409194NLI interacting factor-like phosphatase family protein
LOC_Os01g55710Os.54916.1.S1_at1/111+32409864..32410541hypothetical protein
LOC_Os01g55720Os.16746.1.S1_at11/111+32415117..32415884expressed protein
LOC_Os01g55720Os.16746.1.S1_x_at11/111+32415117..32415884expressed protein
LOC_Os01g55730Os.10016.1.S1_a_at10/111+32418474..32420989expressed protein
LOC_Os01g55740Os.42060.1.S1_at10/111+32421251..32425563Rhomboid family protein, expressed
LOC_Os01g55750Os.27829.1.S1_at11/111+32433690..32436591TCP family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16746.1.S1_x_at--634--6391Chr01:32415674..32415698 (25 bp)
GATCGACCTGGCGATGGCGACCAAG
LOC_Os01g55720
Os.16746.1.S1_x_at--575--1011Chr01:32415633..32415657 (25 bp)
AGGTAATGTGGGAGCACCGGCTGCA
LOC_Os01g55720
Os.16746.1.S1_x_at--385--4411Chr01:32415580..32415604 (25 bp)
GCCACGGTGGTGTCGATCTCCGCCA
LOC_Os01g55720
Os.16746.1.S1_x_at--806--1731Chr01:32415442..32415466 (25 bp)
ACCATCGACGAGTCCGGCAAGGAGC
LOC_Os01g55720
Os.16746.1.S1_x_at--201--9291Chr01:32415344..32415368 (25 bp)
TCCGGAGCCGGAGATCTAGAAAATC
LOC_Os01g55720
Os.16746.1.S1_x_at--344--7831Chr01:32415243..32415267 (25 bp)
GGTAATCGCCAGCATGGGCCCACCT
LOC_Os01g55720
Os.16746.1.S1_x_at--1146--8631Chr01:32415229..32415253 (25 bp)
TGGGCCCACCTGGAAGTGCGTGCCA
LOC_Os01g55720
Os.16746.1.S1_x_at--691--8651Chr01:32415182..32415206 (25 bp)
TGGGCTCTGTGTTAGCGTAGGATTC
LOC_Os01g55720
Os.16746.1.S1_x_at--7--8691Chr01:32415175..32415199 (25 bp)
TGTGTTAGCGTAGGATTCCGCCTCC
LOC_Os01g55720
Os.16746.1.S1_x_at--611--6611Chr01:32415166..32415190 (25 bp)
GTAGGATTCCGCCTCCGTTGTGGTC
LOC_Os01g55720
Os.16746.1.S1_x_at--152--8391Chr01:32415146..32415170 (25 bp)
TGGTCCGGGGTGTACAATACCATTC
LOC_Os01g55720
Target Sequence 
GATCGACCTGGCGATGGCGACCAAGGGGAATAAGCTCGGGGAGGTAATGTGGGAGCACCGGCTGCAGGCGGCGGCCGTGG
TGGCGCTGGTGGCGGCCACGGTGGTGTCGATCTCCGCCATCGGGCCCAGGCTCGGCGCCGTGGTCTCCTTCTTCTNGGCC
GCTGCTCGTCTNCACGGGGTTCTTCCTCGTGGCCGTGGCCGTCCTGCTCCGGATCTCNCCGCCCNNNTCCAGCACCATCG
ACGAGTCCGGCAAGGAGCTCATCGACTTCGTNGCCGGGTGCCGCCCGGAGCANCACCCCCCGGAGGCGGCGGAGGCCGCC
GTGGACGTGCCTCCGGAGCCGGAGATCTAGAAAATCGAGGGTGGCGGGCGTGGCGCGGGCGGCCGGCGGAATCAGCGGCG
CCTCGTCGCCGGGCGCGGTGGGGTTGTGTGGGGTAATCGCCAGCATGGGCCCACCTGGAAGTGCGTGCCACCCCCGGTGT
ACGGTGCGCCCGTGGGCTCTGTGTTAGCGTAGGATTCCGCCTCCGTTGTGGTCCGGGGTGTACAATACCATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16746.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis