Browse Element(s) Details


Os.27829.1.S1_at

Description gb:AK071964.1
DB_XREF= gi:32981987
TID=Os.27829.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27829 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0512C01.32 (P0512C01.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013079O19, full insert sequence.
FL= gb:AK071964.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5575011/11TCP family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55700NANA1+32406246..32409194NLI interacting factor-like phosphatase family protein
LOC_Os01g55710Os.54916.1.S1_at1/111+32409864..32410541hypothetical protein
LOC_Os01g55720Os.16746.1.S1_at11/111+32415117..32415884expressed protein
LOC_Os01g55720Os.16746.1.S1_x_at11/111+32415117..32415884expressed protein
LOC_Os01g55730Os.10016.1.S1_a_at10/111+32418474..32420989expressed protein
LOC_Os01g55740Os.42060.1.S1_at10/111+32421251..32425563Rhomboid family protein, expressed
LOC_Os01g55750Os.27829.1.S1_at11/111+32433690..32436591TCP family transcription factor containing protein, expressed
LOC_Os01g55770Os.5607.1.S1_at10/111+32450142..32454831expressed protein
LOC_Os01g55790OsAffx.11616.1.S1_at11/111+32457103..32457495hypothetical protein
LOC_Os01g55780Os.9693.1.S1_at10/111+32457439..32463839glycerophosphoryl diester phosphodiesterase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0048366biological_processleaf development
GO:0009507cellular_componentchloroplast
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27829.1.S1_at--863--8411Chr01:32434189..32434213 (25 bp)
GGCCGCATCATCAGCTGGTGTTCTA
LOC_Os01g55750
Os.27829.1.S1_at--1022--8411Chr01:32434155..32434179 (25 bp)
GGCCGAGCAGTTCACAGTAGACAAC
LOC_Os01g55750
Os.27829.1.S1_at--271--1191Chr01:32434140..32434164 (25 bp)
AGTAGACAACCTTGGCTCGCAGGGC
LOC_Os01g55750
Os.27829.1.S1_at--365--9451Chr01:32434103..32434127 (25 bp)
TCGGCGAGAGCTTTCCATGATCAGA
LOC_Os01g55750
Os.27829.1.S1_at--659--7031Chr01:32434049..32434073 (25 bp)
GTACACACACTGGAACAACACTCTT
LOC_Os01g55750
Os.27829.1.S1_at--788--2471Chr01:32434033..32434057 (25 bp)
AACACTCTTCGATCGTCGACAAGGT
LOC_Os01g55750
Os.27829.1.S1_at--442--2911Chr01:32434008..32434032 (25 bp)
AAGGATCGATGAGCTCTACCAAAAG
LOC_Os01g55750
Os.27829.1.S1_at--785--8331Chr01:32433862..32433886 (25 bp)
GGCTGCTAATTTCTTTTGCTCTGAA
LOC_Os01g55750
Os.27829.1.S1_at--50--3691Chr01:32433814..32433838 (25 bp)
CTTTGCTGCATATGCCTGTGTGCAA
LOC_Os01g55750
Os.27829.1.S1_at--68--10271Chr01:32433711..32433735 (25 bp)
TTTGAACCTTTCAGTTCTGCCTAGC
LOC_Os01g55750
Os.27829.1.S1_at--817--6711Chr01:32433698..32433722 (25 bp)
GTTCTGCCTAGCCTTAATTTTCTTT
LOC_Os01g55750
Target Sequence 
GGCCGCATCATCAGCTGGTGTTCTACTCCTCCGAGGCCGAGCAGTTCACAGTAGACAACCTTGGCTCGCAGGGCTTGTCC
CTGAGCTCGGCGAGAGCTTTCCATGATCAGACAGGAAGCTAAGCAAGCTCGATCTACACAGTACACACACTGGAACAACA
CTCTTCGATCGTCGACAAGGTAAGGATCGATGAGCTCTACCAAAAGAACAAATCTAAGCTAGCTAGTGCAAGTGTGTGCA
TTGCTTTGATCTATGTATTAATTTCTTTCAAGGGAACAATTAAGCTTGTGGGTTAAGATTTAAGAAGGAAGATACTGCCA
GCTAGCTGGCTGCTAATTTCTTTTGCTCTGAAACTAGGGCAAGAAATATGCAGGGCTTTGCTGCATATGCCTGTGTGCAA
TACGGATTTGTTACTTCTTTTTATATGCAAAGAAGTAATTGATGTATTGGCTTGTGTAATAATTAATAAGTTCTGAATTT
TGAACCTTTCAGTTCTGCCTAGCCTTAATTTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis