Browse Element(s) Details


Os.42060.1.S1_at

Description gb:NM_191346.1
DB_XREF= gi:34909775
GEN=P0512C01.30
TID=Os.42060.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42060 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0512C01.30 (P0512C01.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0512C01.30 (P0512C01.30), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5574010/11Rhomboid family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55660NANA1+32392337..32396694retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g55670NANA1+32397767..32398923expressed protein
LOC_Os01g55690Os.22346.1.S1_x_at11/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55690OsAffx.27508.71.S1_s_at11/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55690Os.22346.2.S1_x_at11/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55690Os.12807.2.S1_x_at4/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55690Os.16515.1.S1_x_at2/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55700NANA1+32406246..32409194NLI interacting factor-like phosphatase family protein
LOC_Os01g55710Os.54916.1.S1_at1/111+32409864..32410541hypothetical protein
LOC_Os01g55720Os.16746.1.S1_at11/111+32415117..32415884expressed protein
LOC_Os01g55720Os.16746.1.S1_x_at11/111+32415117..32415884expressed protein
LOC_Os01g55730Os.10016.1.S1_a_at10/111+32418474..32420989expressed protein
LOC_Os01g55740Os.42060.1.S1_at10/111+32421251..32425563Rhomboid family protein, expressed
LOC_Os01g55750Os.27829.1.S1_at11/111+32433690..32436591TCP family transcription factor containing protein, expressed
LOC_Os01g55770Os.5607.1.S1_at10/111+32450142..32454831expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42060.1.S1_at--684--4391Chr01:32421745..32421769 (25 bp)
GCCAATGTGGGCGTGTTCATGCTAT
LOC_Os01g55740
Os.42060.1.S1_at--239--8791Chr01:32421758..32421782 (25 bp)
TGTTCATGCTATGGCACCTGGCTGA
LOC_Os01g55740
Os.42060.1.S1_at--664--1771Chr01:32421773..32421797 (25 bp)
ACCTGGCTGATCCTAGCTTCATGAG
LOC_Os01g55740
Os.42060.1.S1_at--1021--6151Chr01:32421918..32421942 (25 bp)
GAGGTTACACACGTTGCTCACGAAT
LOC_Os01g55740
Os.42060.1.S1_at--301--3031Chr01:32421940..32421964 (25 bp)
AATGCCTTCAGCCACGCAGAGAGTG
LOC_Os01g55740
Os.42060.1.S1_at--133--6031Chr01:32421958..32421982 (25 bp)
GAGAGTGGTCACCTCATCAGCAATA
LOC_Os01g55740
Os.42060.1.S1_at--204--3111Chr01:32421979..32422003 (25 bp)
AATATGATCGGTCTCTACTTCTTCG
LOC_Os01g55740
Os.42060.1.S1_at--66--2511Chr01:32423274..32423298 (25 bp)
AACATGTTTGGTCCTGCTTTTCTAC
LOC_Os01g55740
Os.42060.1.S1_at--120--7971Chr01:32423328..32423352 (25 bp)
GGATCTGCATTCTTCTTGCTAGAGA
LOC_Os01g55740
Os.42060.1.S1_at--128--9731NONE
TCAAGAACTCCTGCGCTTGGTGCAA
NONE
Os.42060.1.S1_at--1156--7131Chr01:32424618..32424642 (25 bp)
GTCTATCTTTACTTCTTCATTCCTA
LOC_Os01g55740
Target Sequence 
GCCAATGTGGGCGTGTTCATGCTATGGCACCTGGCTGATCCTAGCTTCATGAGGAGGCATTTNATGATTTCTCTTGATAA
CTTCAAAAGCGGGAGGTTACACACGTTGCTCACGAATGCCTTCAGCCACGCAGAGAGTGGTCACCTCATCAGCAATATGA
TCGGTCTCTACTTCTTCGGATCAAGTATTTCCAACATGTTTGGTCCTGCTTTTCTACTGAAGTTGTACGTAGCAGGAGCA
CTTGCTGGATCTGCATTCTTCTTGCTAGAGAAAGCCTTCCTANGCTCCACGAAGACAGTTTTATGGCGGATGGGACAATT
CAAGAACTCCTGCGCTTGGTGCAAGTGCTGCTGCTAATGCAATTATCCTTCTTGACATCTTTTTGTATCCAAAGAAACTA
GTCTATCTTTACTTCTTCATTCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42060.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis