Browse Element(s) Details


Os.5607.1.S1_at

Description gb:AK063778.1
DB_XREF= gi:32973796
TID=Os.5607.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.5607 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0512C01.35 (P0512C01.35), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-D04, full insert sequence.
FL= gb:AK063778.1 gb:AK122186.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5577010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55740Os.42060.1.S1_at10/111+32421251..32425563Rhomboid family protein, expressed
LOC_Os01g55750Os.27829.1.S1_at11/111+32433690..32436591TCP family transcription factor containing protein, expressed
LOC_Os01g55770Os.5607.1.S1_at10/111+32450142..32454831expressed protein
LOC_Os01g55790OsAffx.11616.1.S1_at11/111+32457103..32457495hypothetical protein
LOC_Os01g55780Os.9693.1.S1_at10/111+32457439..32463839glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
LOC_Os01g55799Os.11990.1.S1_a_at11/111+32464214..32470278Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g55799Os.11990.1.S2_at11/111+32464214..32470278Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g55820Os.37620.1.S1_at11/111+32472695..32474213expressed protein
LOC_Os01g55830Os.2241.1.S1_a_at11/111+32474993..32478920glutathione S-transferase GSTF2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5607.1.S1_at--629--10511Chr01:32454673..32454697 (25 bp)
TTCAAGAAGCCGTGGGAGATCACCG
LOC_Os01g55770
Os.5607.1.S1_at--217--8451Chr01:32454581..32454605 (25 bp)
GGCCACCCTGACGAAGGACACGATG
LOC_Os01g55770
Os.5607.1.S1_at--821--1851Chr01:32454522..32454546 (25 bp)
ACGACATCAAGTACTACACGCGCGA
LOC_Os01g55770
Os.5607.1.S1_at--862--9151Chr01:32454393..32454417 (25 bp)
TGCCTTACGTGAACACCGCCGTGGA
LOC_Os01g55770
Os.5607.1.S1_at--759--6231NONE
GATGGTCGAGGTATCTACCTTTCTT
NONE
Os.5607.1.S1_at--664--3611Chr01:32450352..32450376 (25 bp)
CTTGTGCTTGCACTTCGTCAGAAGT
LOC_Os01g55770
Os.5607.1.S1_at--879--1231Chr01:32450330..32450354 (25 bp)
AGTTGCATTGTCTTCATTTGTGCCC
LOC_Os01g55770
Os.5607.1.S1_at--711--10251Chr01:32450314..32450338 (25 bp)
TTTGTGCCCTTGAAATCCATTTTGT
LOC_Os01g55770
Os.5607.1.S1_at--996--8471Chr01:32450253..32450277 (25 bp)
TGGCGGCAATAATATGACACCTGTG
LOC_Os01g55770
Os.5607.1.S1_at--370--3371Chr01:32450236..32450260 (25 bp)
CACCTGTGGACTTTGCTGAATGTAT
LOC_Os01g55770
Os.5607.1.S1_at--408--4751Chr01:32450170..32450194 (25 bp)
GCTGATGCTTTGGTAGTATGGTTCA
LOC_Os01g55770
Target Sequence 
TTCAAGAAGCCGTGGGAGATCACCGGCCCGTGCGCCTCCCCCGAGTACCGCAGCGCGCTCCCGGGCGCCCTGGAGTACCG
CCACCGCTGCCCGGCCACCCTGACGAAGGACACGATGGCCGTCGTGCCCACCTCCGAGCCCGAGACCGTCTACGACATCA
AGTACTACACGCGCGACCGCCGCCGTGACCGCCCGCCCGTCCGCCGCACCCTCCTCCGCAAGCCCGACCTCGAGCGCTAC
ATGGCCGCCAAGCAGTTCGACCCCGCCAAGGACTTCCCCGTGCCTTACGTGAACACCGCCGTGGAGGAGGACTACGACGC
CGTCGGCGGCGGCTACCAGAAGTGATGGTCGAGGTATCTACCTTTCTTGTGCTTGCACTTCGTCAGAAGTTGCATTGTCT
TCATTTGTGCCCTTGAAATCCATTTTGTATTTCAGAGGAAAAAAAATCTGGTTGTAAGAGATGATGGCGGCAATAATATG
ACACCTGTGGACTTTGCTGAATGTATCTTTCTTGTAAGTTGTATCCTAAAACTTGGAACTACCTGATGCTGATGCTTTGG
TAGTATGGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5607.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis