Browse Element(s) Details


Os.37620.1.S1_at

Description gb:AK108127.1
DB_XREF= gi:32993336
TID=Os.37620.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37620 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0403C05.4 (P0403C05.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-D06, full insert sequence.
FL= gb:AK108127.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5582011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55770Os.5607.1.S1_at10/111+32450142..32454831expressed protein
LOC_Os01g55790OsAffx.11616.1.S1_at11/111+32457103..32457495hypothetical protein
LOC_Os01g55780Os.9693.1.S1_at10/111+32457439..32463839glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
LOC_Os01g55799Os.11990.1.S1_a_at11/111+32464214..32470278Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g55799Os.11990.1.S2_at11/111+32464214..32470278Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g55820Os.37620.1.S1_at11/111+32472695..32474213expressed protein
LOC_Os01g55830Os.2241.1.S1_a_at11/111+32474993..32478920glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g55840OsAffx.9423.1.S1_x_at11/111+32481123..32483001transposon protein, putative, unclassified
LOC_Os01g55850OsAffx.23802.1.S1_at11/111+32492288..32492644hypothetical protein
LOC_Os01g55860Os.23683.1.A1_at11/111+32494808..32497982expressed protein
LOC_Os01g55870Os.26842.1.S1_at11/111+32498682..32501828Chorismate mutase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37620.1.S1_at--767--5151Chr01:32473192..32473337 (25 bp)
GCAACCGCAAGTGCTGCAGGGACAA
LOC_Os01g55820
Os.37620.1.S1_at--924--6951Chr01:32473068..32473092 (25 bp)
GTACGCCGATCATGGGAGGGACCTT
LOC_Os01g55820
Os.37620.1.S1_at--729--1851Chr01:32473009..32473033 (25 bp)
ACGACTAGCGCCTTGAATCCTGACA
LOC_Os01g55820
Os.37620.1.S1_at--1051--3031Chr01:32472994..32473018 (25 bp)
AATCCTGACAGCAGCGAAGCACCGT
LOC_Os01g55820
Os.37620.1.S1_at--208--631Chr01:32472925..32472949 (25 bp)
ATGCTGCTCTCTAATTTTCTTTTGG
LOC_Os01g55820
Os.37620.1.S1_at--86--10251Chr01:32472821..32472845 (25 bp)
TTTGGAGCTTGTCGCGGCCTGTTCT
LOC_Os01g55820
Os.37620.1.S1_at--343--10292Chr03:34732835..34732953 (24 bp)
TTTCTTTACCAGAACTGCAGGTCCT
NONE
Os.37620.1.S1_at--356--1971Chr01:32472782..32472806 (25 bp)
ACTGCAGGTCCTGGGTGTTTACACC
LOC_Os01g55820
Os.37620.1.S1_at--808--5451Chr01:32472738..32472762 (25 bp)
GAACTGGCCGTTTGCATCATGGCAT
LOC_Os01g55820
Os.37620.1.S1_at--845--1191Chr01:32472709..32472733 (25 bp)
AGTATGTTATCGTGCTAGTGTCAGC
LOC_Os01g55820
Os.37620.1.S1_at--337--4871Chr01:32472696..32472720 (25 bp)
GCTAGTGTCAGCACATTCTCACTGA
LOC_Os01g55820
Target Sequence 
GCAACCGCAAGTGCTGCAGGGACAAGCACCGGAACCGGCACGGCGGGTGCAGGCACAGGCACCGGTACAAGCACGAGCAC
GAGCACGAGCACTTCTTCCCCGGGCTCTTCAACTGCAGCCACGGGTACGCCGATCATGGGAGGGACCTTCGCTACGCCGA
TCGGCGGCGGCGCGTCTGGGCCGACGACTAGCGCCTTGAATCCTGACAGCAGCGAAGCACCGTCCCCGTCCCTTGGACGT
CATCTTCTCCTCACGTGCATTGCCTCCATGCTGCTCTCTAATTTTCTTTTGGCGTAGTAATTTGGCCGGAAAGTAACGTG
AACTGAAGCAGCATACTGTGGGAGAATGGAGATTTGGCTTTCCTTTTCTGCTTTGGAGCTTGTCGCGGCCTGTTCTTTTT
CTTTACCAGAACTGCAGGTCCTGGGTGTTTACACCTGTTGTACCAGTGCCCAGTGAACTGGCCGTTTGCATCATGGCATG
TTTAGTATGTTATCGTGCTAGTGTCAGCACATTCTCACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37620.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis