Browse Element(s) Details


Os.26842.1.S1_at

Description gb:AK068983.1
DB_XREF= gi:32979007
TID=Os.26842.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26842 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative chorismate mutase precursor (P0403C05.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001N13, full insert sequence.
FL= gb:AK068983.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5587011/11Chorismate mutase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55820Os.37620.1.S1_at11/111+32472695..32474213expressed protein
LOC_Os01g55830Os.2241.1.S1_a_at11/111+32474993..32478920glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g55840OsAffx.9423.1.S1_x_at11/111+32481123..32483001transposon protein, putative, unclassified
LOC_Os01g55850OsAffx.23802.1.S1_at11/111+32492288..32492644hypothetical protein
LOC_Os01g55860Os.23683.1.A1_at11/111+32494808..32497982expressed protein
LOC_Os01g55870Os.26842.1.S1_at11/111+32498682..32501828Chorismate mutase, chloroplast precursor, putative, expressed
LOC_Os01g55880Os.6294.1.S1_s_at2/111+32504738..32508640hemimethylated DNA binding domain containing protein
LOC_Os01g55890Os.49148.2.S1_at11/111+32512259..32516604expressed protein
LOC_Os01g55890Os.49148.1.S1_x_at11/111+32512259..32516604expressed protein
LOC_Os01g55900Os.18464.1.S1_at11/111+32516779..32520116expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009096biological_processaromatic amino acid family biosynthesis, anthranilate pathway
GO:0009607biological_processresponse to biotic stimulus
GO:0016089biological_processaromatic amino acid family biosynthesis, shikimate pathway
GO:0005829cellular_componentcytosol
GO:0009536cellular_componentplastid
GO:0004106molecular_functionchorismate mutase activity
GO:0016688molecular_functionL-ascorbate peroxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26842.1.S1_at--685--7831Chr01:32499685..32499709 (25 bp)
GGTAATTATGGATCCAGTGCTCTTT
LOC_Os01g55870
Os.26842.1.S1_at--812--4991Chr01:32499353..32499376 (24 bp)
GCAGGCGCTCTCCAAAAGAATTCAC
LOC_Os01g55870
Os.26842.1.S1_at--1001--8291Chr01:32499308..32499332 (25 bp)
GGCTAAGTTTCAAGAGTCTCCTGAA
LOC_Os01g55870
Os.26842.1.S1_at--331--3851Chr01:32499288..32499312 (25 bp)
CTGAAGCTTACATGCCTGCGATAAT
LOC_Os01g55870
Os.26842.1.S1_at--704--8111Chr01:32499113..32499137 (25 bp)
GGACTGCGATCAACTAATGCACCTC
LOC_Os01g55870
Os.26842.1.S1_at--308--2391Chr01:32499078..32499102 (25 bp)
AAACGGTGGAGCGTGCTATTGAACA
LOC_Os01g55870
Os.26842.1.S1_at--365--7031Chr01:32498945..32498969 (25 bp)
GTACAGCTACAGGATCATGCCGCTA
LOC_Os01g55870
Os.26842.1.S1_at--908--6431Chr01:32498933..32498957 (25 bp)
GATCATGCCGCTAACCAAGGAGGTT
LOC_Os01g55870
Os.26842.1.S1_at--956--2831Chr01:32498907..32498931 (25 bp)
AAGTAGCCTACTTGCTGAGGAGATT
LOC_Os01g55870
Os.26842.1.S1_at--429--4011Chr01:32498868..32498892 (25 bp)
CGATTGTAAACTGCCAGCTTCGGTT
LOC_Os01g55870
Os.26842.1.S1_at--1072--2631Chr01:32498810..32498834 (25 bp)
AACCATAGGTATCCATTTTGGGACA
LOC_Os01g55870
Target Sequence 
GGTAATTATGGATCCAGTGCTCTTTGTGACACNATCTGCTTGCAGGCGCTCTCCAAAAGAATTCACTATGGTAAGTTTGT
GGCAGAGGCTAAGTTTCAAGAGTCTCCTGAAGCTTACATGCCTGCGATAATAGCACAGGACTGCGATCAACTAATGCACC
TCCTCACCTATGAAACGGTGGAGCGTGCTATTGAACATAGGGTGGAAGCTAAGGCTAAGATCTTTGGACAGGAGGTGGAT
TTAGGCGCTGAAGACAACGGCGCTCCACCAATGTACAAGATAAGGCCCAGTTTGGTNGCTGAACTGTACAGCTACAGGAT
CATGCCGCTAACCAAGGAGGTTCAAGTAGCCTACTTGCTGAGGAGATTGGATTGATTGTTTACGATTGTAAACTGCCAGC
TTCGGTTTCCTGGCATCAAAGAATAAATTAGGGGAAAGACAACCATAGGTATCCATTTTGGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26842.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis