Browse Element(s) Details


Os.49148.1.S1_x_at

Description gb:AK068053.1
DB_XREF= gi:32978071
TID=Os.49148.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49148 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013134N08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134N08, full insert sequence.
FL= gb:AK068053.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5589011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55850OsAffx.23802.1.S1_at11/111+32492288..32492644hypothetical protein
LOC_Os01g55860Os.23683.1.A1_at11/111+32494808..32497982expressed protein
LOC_Os01g55870Os.26842.1.S1_at11/111+32498682..32501828Chorismate mutase, chloroplast precursor, putative, expressed
LOC_Os01g55880Os.6294.1.S1_s_at2/111+32504738..32508640hemimethylated DNA binding domain containing protein
LOC_Os01g55890Os.49148.2.S1_at11/111+32512259..32516604expressed protein
LOC_Os01g55890Os.49148.1.S1_x_at11/111+32512259..32516604expressed protein
LOC_Os01g55900Os.18464.1.S1_at11/111+32516779..32520116expressed protein
LOC_Os01g55910NANA1+32533072..32538098retrotransposon protein, putative, unclassified
LOC_Os01g55920Os.28943.1.S1_x_at4/111+32538421..32541766retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49148.1.S1_x_at--379--7131Chr01:32513738..32513762 (25 bp)
GTCATTATACGCCATCTTGCACAGC
LOC_Os01g55890
Os.49148.1.S1_x_at--683--6071Chr01:32513429..32513453 (25 bp)
GAGTATTTGATCGTCCTCCATCAGA
LOC_Os01g55890
Os.49148.1.S1_x_at--1002--1371Chr01:32513407..32513431 (25 bp)
AGACCCGAATGCAGTACTTCTCAGA
LOC_Os01g55890
Os.49148.1.S1_x_at--1102--8031Chr01:32512733..32512757 (25 bp)
GGAGATATCTGTAGCTGCACATGAC
LOC_Os01g55890
Os.49148.1.S1_x_at--427--9031Chr01:32512718..32512742 (25 bp)
TGCACATGACACCACTGGCGGAATG
LOC_Os01g55890
Os.49148.1.S1_x_at--455--3411Chr01:32512492..32512516 (25 bp)
CAGAAGATTGGCTTGGAACCGTCAT
LOC_Os01g55890
Os.49148.1.S1_x_at--33--5451Chr01:32512477..32512501 (25 bp)
GAACCGTCATACGATCTTCCAGATA
LOC_Os01g55890
Os.49148.1.S1_x_at--1113--3131Chr01:32512451..32512475 (25 bp)
AATTCTTGGCCTATCATTTTCGGGA
LOC_Os01g55890
Os.49148.1.S1_x_at--259--9432Chr06:26731733..26731752 (20 bp)
TCGGGAGTAAGCATCCATTGGCAAA
NONE
Os.49148.1.S1_x_at--1034--7671Chr01:32512340..32512364 (25 bp)
GGGTTATTATTGCTGAATCTCATAG
LOC_Os01g55890
Os.49148.1.S1_x_at--1022--3411Chr01:32512303..32512327 (25 bp)
CAGAGCTCGGTGTTATGCTACAAGT
LOC_Os01g55890
Target Sequence 
GTCATTATACGCCATCTTGCACAGCTTCTGAGTCCAAAATATGTTGTATTTCTGACAGATGTCCATGGAGTATTTGATCG
TCCTCCATCAGACCCGAATGCAGTACTTCTCAGAGAGATAGCGGTGGATGANANTGNCAGCTGNTCGATTGTAAAACCAG
CATTGNAAGNCAACAAGAAAGGAGTGGAGATATCTGTAGCTGCACATGACACCACTGGCGGAATGGAGACCANAATATTG
GAAGCTGCTGCGATAGCTAGGNCTTGGAGTTGATGTGTATATTACAAAGGTTGGTACAGAACANTTCACTGAGAGCCTTA
AAAGGGGACACGAGCTCAGAAGATTGGCTTGGAACCGTCATACGATCTTCCAGATAGAATTCTTGGCCTATCATTTTCGG
GAGTAAGCATCCATTGGCAAANTATTTNATCACCANTTATTGTAGGACGNTTGTNAAGNTATGAGCTGATCACNCTGTCA
AATGATTCATGGGGTTATTATTGCTGAATCTCATAGCAGACAATGAGNCAGAGCTCGGTGTTATGCTACAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49148.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis