Browse Element(s) Details


Os.18464.1.S1_at

Description gb:AK071863.1
DB_XREF= gi:32981886
TID=Os.18464.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18464 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023122I17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023122I17, full insert sequence.
FL= gb:AK071863.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5590011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55850OsAffx.23802.1.S1_at11/111+32492288..32492644hypothetical protein
LOC_Os01g55860Os.23683.1.A1_at11/111+32494808..32497982expressed protein
LOC_Os01g55870Os.26842.1.S1_at11/111+32498682..32501828Chorismate mutase, chloroplast precursor, putative, expressed
LOC_Os01g55880Os.6294.1.S1_s_at2/111+32504738..32508640hemimethylated DNA binding domain containing protein
LOC_Os01g55890Os.49148.2.S1_at11/111+32512259..32516604expressed protein
LOC_Os01g55890Os.49148.1.S1_x_at11/111+32512259..32516604expressed protein
LOC_Os01g55900Os.18464.1.S1_at11/111+32516779..32520116expressed protein
LOC_Os01g55910NANA1+32533072..32538098retrotransposon protein, putative, unclassified
LOC_Os01g55920Os.28943.1.S1_x_at4/111+32538421..32541766retrotransposon protein, putative, unclassified
LOC_Os01g55930Os.47130.4.A1_x_at2/111+32542893..32543216retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0048366biological_processleaf development
GO:0005634cellular_componentnucleus
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18464.1.S1_at--1140--8951Chr01:32519655..32519679 (25 bp)
TGACACCTGAGTTCCACAATGCATA
LOC_Os01g55900
Os.18464.1.S1_at--677--231Chr01:32519679..32519703 (25 bp)
ATATTATTCTGTTCGGTGCACACTA
LOC_Os01g55900
Os.18464.1.S1_at--136--8211Chr01:32519717..32519741 (25 bp)
GGAATCAGCATCTGTTCGGTGTACT
LOC_Os01g55900
Os.18464.1.S1_at--851--10611Chr01:32519731..32519755 (25 bp)
TTCGGTGTACTGCTGCCTTAGTGTA
LOC_Os01g55900
Os.18464.1.S1_at--584--4451Chr01:32519745..32519769 (25 bp)
GCCTTAGTGTACTGCTGCCTTATGA
LOC_Os01g55900
Os.18464.1.S1_at--346--2951Chr01:32519772..32519796 (25 bp)
AAGGCTGTGCAGTTCATTGAGACAT
LOC_Os01g55900
Os.18464.1.S1_at--33--1831Chr01:32519827..32519851 (25 bp)
ACGCCTGATAAGTTTTGTAGATGCA
LOC_Os01g55900
Os.18464.1.S1_at--137--5691Chr01:32519852..32519876 (25 bp)
GACTTGCAGAGCTGACAATTCGTCA
LOC_Os01g55900
Os.18464.1.S1_at--138--111Chr01:32519869..32519893 (25 bp)
ATTCGTCAGCTAGCAAGGGCAGCTT
LOC_Os01g55900
Os.18464.1.S1_at--27--9191Chr01:32519897..32519921 (25 bp)
TGCCTGCCTGCTAGAGGCAATTTGT
LOC_Os01g55900
Os.18464.1.S1_at--527--691Chr01:32520063..32520087 (25 bp)
ATGAGCCTCTATTGTGTTTCGGGAA
LOC_Os01g55900
Target Sequence 
TGACACCTGAGTTCCACAATGCATATATTATTCTGTTCGGTGCACACTAAACCAAAGACAACGGAATCAGCATCTGTTCG
GTGTACTGCTGCCTTAGTGTACTGCTGCCTTATGAAAAAGGCTGTGCAGTTCATTGAGACATGTACAAAACNCTGAGTTT
ATGCTNTNGTATACGCCTGATAAGTTTTGTAGATGCAGACTTGCAGAGCTGACAATTCGTCAGCTAGCAAGGGCAGCTTC
CCTGCCTGCCTGCTAGAGGCAATTTGTTGTAGGTGATGCACAAGTACTAGGAATCTTTTCCCCCTTCCTTTATTTTCTTG
CTTATGAGGCCATTGGCACCGAAATGCCTGNTTATGCGCAGCTTGAACAATNTNTTCCAATATGATTGCCGAGCATGNGN
GTGTGTATATGAGCCTCTATTGTGTTTCGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18464.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis