Browse Element(s) Details


OsAffx.23802.1.S1_at

Description tigr:9629.m05459
TID=OsAffx.23802.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5585011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55799Os.11990.1.S1_a_at11/111+32464214..32470278Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g55799Os.11990.1.S2_at11/111+32464214..32470278Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g55820Os.37620.1.S1_at11/111+32472695..32474213expressed protein
LOC_Os01g55830Os.2241.1.S1_a_at11/111+32474993..32478920glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g55840OsAffx.9423.1.S1_x_at11/111+32481123..32483001transposon protein, putative, unclassified
LOC_Os01g55850OsAffx.23802.1.S1_at11/111+32492288..32492644hypothetical protein
LOC_Os01g55860Os.23683.1.A1_at11/111+32494808..32497982expressed protein
LOC_Os01g55870Os.26842.1.S1_at11/111+32498682..32501828Chorismate mutase, chloroplast precursor, putative, expressed
LOC_Os01g55880Os.6294.1.S1_s_at2/111+32504738..32508640hemimethylated DNA binding domain containing protein
LOC_Os01g55890Os.49148.2.S1_at11/111+32512259..32516604expressed protein
LOC_Os01g55890Os.49148.1.S1_x_at11/111+32512259..32516604expressed protein
LOC_Os01g55900Os.18464.1.S1_at11/111+32516779..32520116expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23802.1.S1_at--406--1771Chr01:32492392..32492416 (25 bp)
ACCGGCGATGCCAGACGAGGAGTTC
LOC_Os01g55850
OsAffx.23802.1.S1_at--677--3931Chr01:32492394..32492418 (25 bp)
CGGCGATGCCAGACGAGGAGTTCTT
LOC_Os01g55850
OsAffx.23802.1.S1_at--585--1211Chr01:32492412..32492436 (25 bp)
AGTTCTTGGGCCGTCTCTGCGACCA
LOC_Os01g55850
OsAffx.23802.1.S1_at--204--10831Chr01:32492417..32492441 (25 bp)
TTGGGCCGTCTCTGCGACCAGCAGC
LOC_Os01g55850
OsAffx.23802.1.S1_at--142--8331Chr01:32492460..32492484 (25 bp)
GGCTCCCGTGGTGCCAGCAGCTGCA
LOC_Os01g55850
OsAffx.23802.1.S1_at--620--7491Chr01:32492467..32492491 (25 bp)
GTGGTGCCAGCAGCTGCACGCGAGG
LOC_Os01g55850
OsAffx.23802.1.S1_at--386--6391Chr01:32492578..32492602 (25 bp)
GATCGACGCGCGCTACGACGTGTCC
LOC_Os01g55850
OsAffx.23802.1.S1_at--238--4091Chr01:32492581..32492605 (25 bp)
CGACGCGCGCTACGACGTGTCCAAG
LOC_Os01g55850
OsAffx.23802.1.S1_at--1160--1811Chr01:32492583..32492607 (25 bp)
ACGCGCGCTACGACGTGTCCAAGCG
LOC_Os01g55850
OsAffx.23802.1.S1_at--1005--4111Chr01:32492586..32492610 (25 bp)
CGCGCTACGACGTGTCCAAGCGGGT
LOC_Os01g55850
OsAffx.23802.1.S1_at--1032--4111Chr01:32492588..32492612 (25 bp)
CGCTACGACGTGTCCAAGCGGGTCG
LOC_Os01g55850
Target Sequence 
ACCGGCGATGCCAGACGAGGAGTTCTTGGGCCGTCTCTGCGACCAGCAGCAGGGGGCCACGCGGCGGCGGCTCCCGTGGT
GCCAGCAGCTGCACGCGAGGCGGCGCCACGGCGGTGGCGGCGGCGGCGTCGGCGTCGGCAAGCGGCGGCGGGTGCCGATG
CCGCCGCCCAGCCGCGCCGGCGAGGAGATCGACGCGCGCTACGACGTGTCCAAGCGGGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis