Browse Element(s) Details


Os.23683.1.A1_at

Description gb:CA760261
DB_XREF= gi:25804300
DB_XREF=BR060008A20G05.ab1
CLONE=BR060008A20G05.ab1
TID=Os.23683.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23683 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0403C05.8 (P0403C05.8), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5586011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55799Os.11990.1.S1_a_at11/111+32464214..32470278Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g55799Os.11990.1.S2_at11/111+32464214..32470278Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g55820Os.37620.1.S1_at11/111+32472695..32474213expressed protein
LOC_Os01g55830Os.2241.1.S1_a_at11/111+32474993..32478920glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g55840OsAffx.9423.1.S1_x_at11/111+32481123..32483001transposon protein, putative, unclassified
LOC_Os01g55850OsAffx.23802.1.S1_at11/111+32492288..32492644hypothetical protein
LOC_Os01g55860Os.23683.1.A1_at11/111+32494808..32497982expressed protein
LOC_Os01g55870Os.26842.1.S1_at11/111+32498682..32501828Chorismate mutase, chloroplast precursor, putative, expressed
LOC_Os01g55880Os.6294.1.S1_s_at2/111+32504738..32508640hemimethylated DNA binding domain containing protein
LOC_Os01g55890Os.49148.2.S1_at11/111+32512259..32516604expressed protein
LOC_Os01g55890Os.49148.1.S1_x_at11/111+32512259..32516604expressed protein
LOC_Os01g55900Os.18464.1.S1_at11/111+32516779..32520116expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23683.1.A1_at--959--5671Chr01:32496555..32496575 (21 bp)
GACTTGGCCTTTTTGACAGGTCTGA
LOC_Os01g55860
Os.23683.1.A1_at--917--5651Chr01:32497331..32497353 (23 bp)
GACAGGTCTGAAATCGCTTGGAAAA
LOC_Os01g55860
Os.23683.1.A1_at--557--6271Chr01:32497674..32497698 (25 bp)
GATGTCCTGAGAGCACACTATCCAA
LOC_Os01g55860
Os.23683.1.A1_at--68--10151Chr01:32497692..32497716 (25 bp)
TATCCAACATCTTTGACAGCCATCC
LOC_Os01g55860
Os.23683.1.A1_at--888--2071Chr01:32497721..32497745 (25 bp)
ACATCACCCTACTGTTATGCTAACC
LOC_Os01g55860
Os.23683.1.A1_at--1006--1991Chr01:32497749..32497773 (25 bp)
ACTCTACTTCCCACAATTGATGCTA
LOC_Os01g55860
Os.23683.1.A1_at--441--8191Chr01:32497787..32497811 (25 bp)
GGAAGTAAAAGCTCCCTTTCATAGC
LOC_Os01g55860
Os.23683.1.A1_at--425--2051Chr01:32497815..32497839 (25 bp)
ACTTTTGTGTTATACTGCCTGGGAT
LOC_Os01g55860
Os.23683.1.A1_at--1108--6811Chr01:32497852..32497876 (25 bp)
GTTTATTTATTCTGCTGGTTCCAAG
LOC_Os01g55860
Os.23683.1.A1_at--301--11Chr01:32497900..32497924 (25 bp)
AGTTAATTCTTTCTCCAAATCCCAG
LOC_Os01g55860
Os.23683.1.A1_at--706--2271Chr01:32497916..32497940 (25 bp)
AAATCCCAGGAATTCAGTTCCCCAG
LOC_Os01g55860
Target Sequence 
GACTTGGCCTTTTTGACAGGTCTGAAATCGCTTGGAAAAATTCAAATTATGCTCAAATACTTGAGTATCNTCGGGAAGAA
TATGAGCTGAACCAACGTTTTGGAAGCCTCGACTTCAAATTGAAATTTGTGGAGCACAACATTCATTTTCTTCAAGAAGT
TCTCCAGAATAGAAGATCAGATTTGCTGGAGTGGGGTGTCATTATACTGCTGATTATCGAGATTGTCATCTCATTATACG
AAATTATCAAGGATTCCAGCATGATGTCCTGAGAGCACACTATCCAACATCTTTGACAGCCATCCACCCACATCACCCTA
CTGTTATGCTAACCCACACTCTACTTCCCACAATTGATGCTAACCTTAGTTGAAAGGAAGTAAAAGCTCCCTTTCATAGC
TTTACTTTTGTGTTATACTGCCTGGGATGCATTTTTGTTAGTTTATTTATTCTGCTGGTTCCAAGTATACCTCACAGCTA
ACAAGAGCAGTTAATTCTTTCTCCAAATCCCAGGAATTCAGTTCCCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23683.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis