Browse Element(s) Details


Os.49148.2.S1_at

Description gb:AK060621.1
DB_XREF= gi:32970639
TID=Os.49148.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49148 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013134N08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-D03, full insert sequence.
FL= gb:AK060621.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5589011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55850OsAffx.23802.1.S1_at11/111+32492288..32492644hypothetical protein
LOC_Os01g55860Os.23683.1.A1_at11/111+32494808..32497982expressed protein
LOC_Os01g55870Os.26842.1.S1_at11/111+32498682..32501828Chorismate mutase, chloroplast precursor, putative, expressed
LOC_Os01g55880Os.6294.1.S1_s_at2/111+32504738..32508640hemimethylated DNA binding domain containing protein
LOC_Os01g55890Os.49148.2.S1_at11/111+32512259..32516604expressed protein
LOC_Os01g55890Os.49148.1.S1_x_at11/111+32512259..32516604expressed protein
LOC_Os01g55900Os.18464.1.S1_at11/111+32516779..32520116expressed protein
LOC_Os01g55910NANA1+32533072..32538098retrotransposon protein, putative, unclassified
LOC_Os01g55920Os.28943.1.S1_x_at4/111+32538421..32541766retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49148.2.S1_at--840--6311Chr01:32513229..32513253 (25 bp)
GATGAAAATGGCAGCTGGTCGATTG
LOC_Os01g55890
Os.49148.2.S1_at--6--5531Chr01:32513226..32513250 (25 bp)
GAAAATGGCAGCTGGTCGATTGTAA
LOC_Os01g55890
Os.49148.2.S1_at--924--2951Chr01:32513223..32513247 (25 bp)
AATGGCAGCTGGTCGATTGTAAAAC
LOC_Os01g55890
Os.49148.2.S1_at--256--851Chr01:32513222..32513246 (25 bp)
ATGGCAGCTGGTCGATTGTAAAACC
LOC_Os01g55890
Os.49148.2.S1_at--271--8231Chr01:32512413..32512437 (25 bp)
GGCAAATATTTTATCACCATTATTG
LOC_Os01g55890
Os.49148.2.S1_at--591--171Chr01:32512406..32512430 (25 bp)
ATTTTATCACCATTATTGTAGGACG
LOC_Os01g55890
Os.49148.2.S1_at--182--391Chr01:32512401..32512425 (25 bp)
ATCACCATTATTGTAGGACGATTGT
LOC_Os01g55890
Os.49148.2.S1_at--645--1731Chr01:32512398..32512422 (25 bp)
ACCATTATTGTAGGACGATTGTGAA
LOC_Os01g55890
Os.49148.2.S1_at--543--951Chr01:32512387..32512411 (25 bp)
AGGACGATTGTGAAGCTATGAGCTG
LOC_Os01g55890
Os.49148.2.S1_at--871--5391Chr01:32512376..32512400 (25 bp)
GAAGCTATGAGCTGATCACCTGTCA
LOC_Os01g55890
Os.49148.2.S1_at--36--2711Chr01:32512375..32512399 (25 bp)
AAGCTATGAGCTGATCACCTGTCAA
LOC_Os01g55890
Target Sequence 
GATGAAAATGGCAGCTGGTCGATTGTAAAACCAGCATTGAAAGGCAACAAGAAAGGAGTGGAGATATCTGTAGCTGCACA
TGACACCACTGGCGGAATGGAGACCAAAATATTGGAAGCTGCTGCGATAGCTAGGCTTGGAGTTGATGTGTATATTACAA
AGGTTGGTACAGAACATTCACTGAGAGCCTTAAAAGGGGACACGAGCTCAGAAGATTGGCTTGGAACCGTCATACGATCT
TCCAGATAGAATTCTTGGCCTATCATTTTCGGGAGTAAGCATCCATTGGCAAATATTTTATCACCATTATTGTAGGACGA
TTGTGAAGCTATGAGCTGATCACCTGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49148.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis