Browse Element(s) Details


Os.9693.1.S1_at

Description gb:AK066596.1
DB_XREF= gi:32976614
TID=Os.9693.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9693 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glycerophosphoryl diester phosphodiesterase (P0512C01.36), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013070K24, full insert sequence.
FL= gb:AK066596.1 gb:AK061563.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5578010/11glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55750Os.27829.1.S1_at11/111+32433690..32436591TCP family transcription factor containing protein, expressed
LOC_Os01g55770Os.5607.1.S1_at10/111+32450142..32454831expressed protein
LOC_Os01g55790OsAffx.11616.1.S1_at11/111+32457103..32457495hypothetical protein
LOC_Os01g55780Os.9693.1.S1_at10/111+32457439..32463839glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
LOC_Os01g55799Os.11990.1.S1_a_at11/111+32464214..32470278Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g55799Os.11990.1.S2_at11/111+32464214..32470278Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g55820Os.37620.1.S1_at11/111+32472695..32474213expressed protein
LOC_Os01g55830Os.2241.1.S1_a_at11/111+32474993..32478920glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g55840OsAffx.9423.1.S1_x_at11/111+32481123..32483001transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0031225cellular_componentanchored to membrane
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9693.1.S1_at--562--8791Chr01:32462764..32462788 (25 bp)
TGTTGTTGGCCTTGGTCCATGGAAA
LOC_Os01g55780
Os.9693.1.S1_at--735--2811Chr01:32462787..32462811 (25 bp)
AAGATACGGTTGTTCCAGCAGCCAA
LOC_Os01g55780
Os.9693.1.S1_at--630--8251Chr01:32462824..32462848 (25 bp)
GGCACCGACTGATCTTGTTGCAAGA
LOC_Os01g55780
Os.9693.1.S1_at--825--9051NONE
TGCTCATAATCTTCAGGTACACCCG
NONE
Os.9693.1.S1_at--919--7731Chr01:32463348..32463372 (25 bp)
GGTACACCCGTACACATACAGGAAC
LOC_Os01g55780
Os.9693.1.S1_at--127--8111Chr01:32463405..32463429 (25 bp)
GGACCCTTATGCTGAGTATGATTTC
LOC_Os01g55780
Os.9693.1.S1_at--401--7791Chr01:32463447..32463471 (25 bp)
GGTCGATGGATTGTTCACTGATTTC
LOC_Os01g55780
Os.9693.1.S1_at--14--5471Chr01:32463496..32463520 (25 bp)
GAACTGGTAGCTCCACATGCGAAGG
LOC_Os01g55780
Os.9693.1.S1_at--696--6371Chr01:32463561..32463585 (25 bp)
GATCTCCCAATATGAAGGTTTCTGA
LOC_Os01g55780
Os.9693.1.S1_at--612--6431Chr01:32463584..32463608 (25 bp)
GATCATGTTTTCCATTTTTCCGTTA
LOC_Os01g55780
Os.9693.1.S1_at--360--3091Chr01:32463684..32463708 (25 bp)
AATACTTGTTTTCTGGTGGCTAGCA
LOC_Os01g55780
Target Sequence 
TGTTGTTGGCCTTGGTCCATGGAAAGATACGGTTGTTCCAGCAGCCAAAAACTATACGATGGCACCGACTGATCTTGTTG
CAAGAGCACATGCTCATAATCTTCAGGTACACCCGTACACATACAGGAACGAGAACCAATTCCTGCACCTCAACTTCCAT
CAGGACCCTTATGCTGAGTATGATTTCTGGATAAACAGCATGGGGGTCGATGGATTGTTCACTGATTTCACTGGATCCCT
GCACCGTTACCAGGAACTGGTAGCTCCACATGCGAAGGATGAAACTGCAAACAGCCTCCTAGTAAAAATTGCTCAAATGA
TCTCCCAATATGAAGGTTTCTGATCATGTTTTCCATTTTTCCGTTAATCGACATGCTTATATACACGCATTAGTGATCAA
GGGTGACCTTGAATGTTACAGAACAAAAAAAAAAAAAAAAAAATACTTGTTTTCTGGTGGCTAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9693.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis