Browse Element(s) Details


Os.10020.1.S1_at

Description gb:AK067048.1
DB_XREF= gi:32977066
TID=Os.10020.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10020 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013093I16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013093I16, full insert sequence.
FL= gb:AK067048.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5347010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53410Os.5294.1.S1_at11/114+31592598..31594336BTB/POZ domain containing protein, expressed
LOC_Os04g53420OsAffx.10931.3.S1_at2/114+31595909..31596364hypothetical protein
LOC_Os04g53430OsAffx.14396.1.S1_at11/114+31598562..31599683BTB/POZ domain containing protein, expressed
LOC_Os04g53440Os.27752.1.S1_at11/114+31600401..31604418RNA Binding Protein 45, putative, expressed
LOC_Os04g53450Os.53152.1.S1_at11/114+31605034..31609789expressed protein
LOC_Os04g53460Os.27353.1.S1_at11/114+31612182..31617391AT hook motif family protein, expressed
LOC_Os04g53470Os.10020.1.S1_at10/114+31619083..31622988expressed protein
LOC_Os04g53480Os.35344.18.S1_x_at9/114+31624098..31627850transposon protein, putative, Mutator sub-class
LOC_Os04g53480Os.35344.3.S1_x_at9/114+31624098..31627850transposon protein, putative, Mutator sub-class
LOC_Os04g53480OsAffx.22940.5.S1_x_at3/114+31624098..31627850transposon protein, putative, Mutator sub-class
LOC_Os04g53490Os.33308.1.S1_at11/114+31629431..31631806expressed protein
LOC_Os04g53496NANA4+31635367..31643224NB-ARC domain containing protein, expressed
LOC_Os04g53502Os.14269.1.S1_x_at9/114+31645122..31648340expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10020.1.S1_at--686--2311Chr04:31619577..31619601 (25 bp)
AAAGGATGACCTCGCCCCAGATCTT
LOC_Os04g53470
Os.10020.1.S1_at--470--1271Chr04:31619559..31619583 (25 bp)
AGATCTTCCCATGCTTCGGCCAAGT
LOC_Os04g53470
Os.10020.1.S1_at--63--6231Chr04:31619523..31619547 (25 bp)
GAGGCCATCTACTATTTACAAGCAA
LOC_Os04g53470
Os.10020.1.S1_at--670--2731Chr04:31619504..31619528 (25 bp)
AAGCAAGCTGCTGGTCCAATTCCAG
LOC_Os04g53470
Os.10020.1.S1_at--117--2671Chr04:31619435..31619459 (25 bp)
AAGCCTGTTGAGAAATCTGTCGCTA
LOC_Os04g53470
Os.10020.1.S1_at--451--2631Chr04:31619325..31619349 (25 bp)
AACCTGCGGTTGTGATTTCTCTGTA
LOC_Os04g53470
Os.10020.1.S1_at--29--6531Chr04:31619312..31619336 (25 bp)
GATTTCTCTGTACTGCTCCATATGG
LOC_Os04g53470
Os.10020.1.S1_at--600--3051Chr04:31619192..31619216 (25 bp)
AATCGGTTGCCGGATCTGAAGCTGG
LOC_Os04g53470
Os.10020.1.S1_at--1048--471Chr04:31619179..31619203 (25 bp)
ATCTGAAGCTGGATGCACTAGTTGC
LOC_Os04g53470
Os.10020.1.S1_at--406--1091Chr04:31619147..31619171 (25 bp)
AGTGTGTATGGCACCTTGTAGAAGC
LOC_Os04g53470
Os.10020.1.S1_at--971--2031Chr04:31619082..31619106 (25 bp)
ACTATGATGTTCAGTGTTCGCTCCA
NONE
Target Sequence 
AAAGGATGACCTCGCCCCAGATCTTCCCATGCTTCGGCCAAGTCAAGTTCGAAAGAGGCCATCTACTATTTACAAGCAAG
CTGCTGGTCCAATTCCAGTCCCCTTGGAGGATGTTACATTTGCAAAGCCTCTACAGATGAGGAAGCCTGTTGAGAAATCT
GTCGCTAAGTGAGAGAACCTGAACTTCTGTAGAAATTCTGAAGTCTGGAGAAGTTCAAAGAAGGCAAAGGCTAGTTTAGA
TTAAGGGAACAGAACCTGCGGTTGTGATTTCTCTGTACTGCTCCATATGGCATTGGACGGTTGGAATTGATTGATGTAAT
CACTGTTGCTGTAATCTCTTTTCTTAAATACTGAGGTGTCAGCATTTATGTCTGAGGCTTTGACGAATCGGTTGCCGGAT
CTGAAGCTGGATGCACTAGTTGCATTTACAAGTGTGTATGGCACCTTGTAGAAGCTTTGTAGAACTGTACTTAAAGTAAA
CTCCATATTTTGTGAACTATGATGTTCAGTGTTCGCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10020.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis