Browse Element(s) Details


Os.10025.1.S1_a_at

Description gb:AK063967.1
DB_XREF= gi:32973985
TID=Os.10025.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.10025 (NCBI UniGene Cluster)
UG_TITLE=Phytoene synthase mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-A11, full insert sequence.
FL= gb:AK063967.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4313011/11Phytoene synthase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43080OsAffx.20097.1.S1_at10/1112+26719386..26722063hypothetical protein
LOC_Os12g43090Os.56160.1.S1_at11/1112+26723908..26725583expressed protein
LOC_Os12g43100Os.27272.1.S1_at11/1112+26726022..26728746PBS lyase HEAT-like repeat family protein, expressed
LOC_Os12g43110Os.55333.1.S1_at10/1112+26734618..26735291Auxin responsive protein, expressed
LOC_Os12g43120OsAffx.32165.1.S1_at11/1112+26737618..26745501expressed protein
LOC_Os12g43130Os.10025.1.S1_a_at11/1112+26746887..26749996Phytoene synthase, chloroplast precursor, putative, expressed
LOC_Os12g43140OsAffx.7876.1.S1_s_at11/1112+26759727..26760347expressed protein
LOC_Os12g43150OsAffx.20098.1.S1_at10/1112+26760625..26764744hypothetical protein
LOC_Os12g43150Os.54175.1.S1_at1/1112+26760625..26764744hypothetical protein
LOC_Os12g43160NANA12+26767810..26769148hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016117biological_processcarotenoid biosynthesis
GO:0016767molecular_functiongeranylgeranyl-diphosphate geranylgeranyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10025.1.S1_a_at--569--9491Chr12:26747417..26747441 (25 bp)
TCTGCGTGCCAGGTTATTCTTTGAT
LOC_Os12g43130
Os.10025.1.S1_a_at--1031--2871Chr12:26747383..26747407 (25 bp)
AAGGGCGTTGCGCATCTAGACTCTG
LOC_Os12g43130
Os.10025.1.S1_a_at--170--5711Chr12:26747367..26747389 (23 bp)
GACTCTGCGAGTAGATGGCCGGTTC
LOC_Os12g43130
Os.10025.1.S1_a_at--245--3971Chr12:26747259..26747282 (24 bp)
CGGTTCTGGCATCTTTGTGGTTATA
LOC_Os12g43130
Os.10025.1.S1_a_at--368--10411Chr12:26747239..26747263 (25 bp)
TTATACCGGCAGATCCTTGATGCTA
LOC_Os12g43130
Os.10025.1.S1_a_at--712--7131Chr12:26747150..26747174 (25 bp)
GTCTTTACCGGTCGCTTATGCAAGA
LOC_Os12g43130
Os.10025.1.S1_a_at--949--4111Chr12:26747047..26747071 (25 bp)
CGCACGATTTCTTGGCTGTTGTATA
LOC_Os12g43130
Os.10025.1.S1_a_at--748--131Chr12:26747021..26747045 (25 bp)
ATTCAAGCAGCTACCTGTATGCCAT
LOC_Os12g43130
Os.10025.1.S1_a_at--446--1671Chr12:26746995..26747019 (25 bp)
AGCCTGCCACAGTTTTTCTTTAGTT
LOC_Os12g43130
Os.10025.1.S1_a_at--573--5731Chr12:26746965..26746989 (25 bp)
GACTGATTTCAGGTCCCTCAATACT
LOC_Os12g43130
Os.10025.1.S1_a_at--457--7671Chr12:26746912..26746936 (25 bp)
GGGTAAGCCCCACAGTTCAAGAAGC
LOC_Os12g43130
Target Sequence 
TCTGCGTGCCAGGTTATTCTTTGATGAGGCGGAGAAGGGCGTTGCGCATCTAGACTCTGCGAGTAGATGGCCGGTTCTGG
CATCTTTGTGGTTATACCGGCAGATCCTTGATGCTATCGAAGCAAACGACTACAACAACTTCACCAAGCGCGCGTATGTA
AACAAGGCAAAGAAGCTGCTGTCTTTACCGGTCGCTTATGCAAGAGCGGCAGTTGCATCATGAACAATCACTAGATCAGA
TGCCTTATTATTTTTTTTCTTTCATTTTCTTTTCNTTTGATTTCGCACGATTTCTTGGCTGTTGTATATATTCAAGCAGC
TACCTGTATGCCATAAGCCTGCCACAGTTTTTCTTTAGTTCAAGGGACTGATTTCAGGTCCCTCAATACTCAACTCTTGT
TAGAAACAAATACAGAGGGGGTAAGCCCCACAGTTCAAGAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10025.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis