Browse Element(s) Details


OsAffx.20097.1.S1_at

Description tigr:9640.m04238
TID=OsAffx.20097.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Sec61 alpha subunit
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4308010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43034NANA12+26695297..26698037retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g43050NANA12+26702127..26708907retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g43060OsAffx.20100.2.S1_at11/1112+26710780..26716787retrotransposon protein, putative, unclassified
LOC_Os12g43060OsAffx.20100.2.S1_x_at10/1112+26710780..26716787retrotransposon protein, putative, unclassified
LOC_Os12g43060OsAffx.20100.1.S1_x_at5/1112+26710780..26716787retrotransposon protein, putative, unclassified
LOC_Os12g43060OsAffx.20100.3.S1_x_at4/1112+26710780..26716787retrotransposon protein, putative, unclassified
LOC_Os12g43070OsAffx.7875.1.S1_at11/1112+26718582..26718956hypothetical protein
LOC_Os12g43080OsAffx.20097.1.S1_at10/1112+26719386..26722063hypothetical protein
LOC_Os12g43090Os.56160.1.S1_at11/1112+26723908..26725583expressed protein
LOC_Os12g43100Os.27272.1.S1_at11/1112+26726022..26728746PBS lyase HEAT-like repeat family protein, expressed
LOC_Os12g43110Os.55333.1.S1_at10/1112+26734618..26735291Auxin responsive protein, expressed
LOC_Os12g43120OsAffx.32165.1.S1_at11/1112+26737618..26745501expressed protein
LOC_Os12g43130Os.10025.1.S1_a_at11/1112+26746887..26749996Phytoene synthase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20097.1.S1_at--653--8411NONE
GGCCGCCAATTGCTGTGCATGTATT
NONE
OsAffx.20097.1.S1_at--562--8191Chr12:26720749..26720773 (25 bp)
GGAAGGCCTTGAACCATGCATACCC
LOC_Os12g43080
OsAffx.20097.1.S1_at--672--311Chr12:26720768..26720792 (25 bp)
ATACCCCTGGATGATGATGCTTGCT
LOC_Os12g43080
OsAffx.20097.1.S1_at--403--691Chr12:26721169..26721193 (25 bp)
ATGAGGCAGTATCCTGGGCACTACT
LOC_Os12g43080
OsAffx.20097.1.S1_at--832--1091Chr12:26721202..26721226 (25 bp)
AGTGGGATCGCCTCTTACATAACAA
LOC_Os12g43080
OsAffx.20097.1.S1_at--322--4371Chr12:26721229..26721577 (25 bp)
CCACTAACAGTTTGCTCACGTTCAA
LOC_Os12g43080
OsAffx.20097.1.S1_at--264--2811Chr12:26721579..26721603 (25 bp)
AAGATACCTCGTCAGGCTTCTAAAG
LOC_Os12g43080
OsAffx.20097.1.S1_at--377--5511Chr12:26721816..26721840 (25 bp)
GAACAAGAGTGTCGCCTGAGCAGCT
LOC_Os12g43080
OsAffx.20097.1.S1_at--633--5771Chr12:26721860..26721884 (25 bp)
GACGAGTCGATTAGTCCCAGGCGAT
LOC_Os12g43080
OsAffx.20097.1.S1_at--586--6331Chr12:26721882..26721906 (25 bp)
GATGCAGGCACTACATGACCATGGC
LOC_Os12g43080
OsAffx.20097.1.S1_at--312--6431Chr12:26721985..26722009 (25 bp)
GATCATGCTTGCTGTGACCGTCATC
LOC_Os12g43080
Target Sequence 
GGCCGCCAATTGCTGTGCATGTATTTTCTGGAAGGCCTTGAACCATGCATACCCCTGGATGATGATGCTTGCTACTTTGG
CCTTCTTTTTGTTAGTGTTGATAATACTGGGAGACCATCACATCACCTTGCCGCCGATGCTTAGCATCAAGTATGGCGAG
ACGAATAAAGTGGTGAACATGCTTGGCATTTGGAAGGAAATGAGGCAGTATCCTGGGCACTACTGGCCTGTCAGTGGGAT
CGCCTCTTACATAACAACGCCACTAACAGTTTGCTCACGTTCAAAAAGATACCTCGTCAGGCTTCTAAAGAAGACGCAAC
GAACAAGAGTGTCGCCTGAGCAGCTGCTGCAGGAGCATGACGAGGACGAGTCGATTAGTCCCAGGCGATGCAGGCACTAC
ATGACCATGGCAGCATATATCGTTGGAATTTGTGTTGGTTTACTGAATCTGTTGGCTGGTTTCATGGGTTTGGGTGGCTC
TGGCCCTGCGATCATGCTTGCTGTGACCGTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20097.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis