Browse Element(s) Details


OsAffx.7875.1.S1_at

Description tigr:9640.m04237
TID=OsAffx.7875.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4307011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43020Os.31497.2.S1_x_at1/1112+26688201..26693976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g43020Os.45212.1.S1_x_at1/1112+26688201..26693976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g43034NANA12+26695297..26698037retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g43050NANA12+26702127..26708907retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g43060OsAffx.20100.2.S1_at11/1112+26710780..26716787retrotransposon protein, putative, unclassified
LOC_Os12g43060OsAffx.20100.2.S1_x_at10/1112+26710780..26716787retrotransposon protein, putative, unclassified
LOC_Os12g43060OsAffx.20100.1.S1_x_at5/1112+26710780..26716787retrotransposon protein, putative, unclassified
LOC_Os12g43060OsAffx.20100.3.S1_x_at4/1112+26710780..26716787retrotransposon protein, putative, unclassified
LOC_Os12g43070OsAffx.7875.1.S1_at11/1112+26718582..26718956hypothetical protein
LOC_Os12g43080OsAffx.20097.1.S1_at10/1112+26719386..26722063hypothetical protein
LOC_Os12g43090Os.56160.1.S1_at11/1112+26723908..26725583expressed protein
LOC_Os12g43100Os.27272.1.S1_at11/1112+26726022..26728746PBS lyase HEAT-like repeat family protein, expressed
LOC_Os12g43110Os.55333.1.S1_at10/1112+26734618..26735291Auxin responsive protein, expressed
LOC_Os12g43120OsAffx.32165.1.S1_at11/1112+26737618..26745501expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009306biological_processprotein secretion
GO:0016020cellular_componentmembrane
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7875.1.S1_at--78--6551Chr12:26718613..26718637 (25 bp)
GATTATTGGCGAGGCTGTTGCCGGA
LOC_Os12g43070
OsAffx.7875.1.S1_at--335--6951Chr12:26718639..26718663 (25 bp)
GTAGAAGACAGCAGCACGAACGCCG
LOC_Os12g43070
OsAffx.7875.1.S1_at--453--8371Chr12:26718666..26718690 (25 bp)
GGCGTCATGGCGGTCTCTTTCCGGC
LOC_Os12g43070
OsAffx.7875.1.S1_at--800--10291Chr12:26718683..26718707 (25 bp)
TTTCCGGCGGAAGGTGCTCTACACG
LOC_Os12g43070
OsAffx.7875.1.S1_at--939--2891Chr12:26718693..26718717 (25 bp)
AAGGTGCTCTACACGGCGGTGTCGC
LOC_Os12g43070
OsAffx.7875.1.S1_at--1113--1491Chr12:26718784..26718808 (25 bp)
AGCACGACCCGCGATACTGGATGAA
LOC_Os12g43070
OsAffx.7875.1.S1_at--69--6491Chr12:26718796..26718820 (25 bp)
GATACTGGATGAACGCCATGTCGGC
LOC_Os12g43070
OsAffx.7875.1.S1_at--310--4431Chr12:26718810..26718834 (25 bp)
GCCATGTCGGCGTCATTGCGGCCTA
LOC_Os12g43070
OsAffx.7875.1.S1_at--171--8611Chr12:26718853..26718877 (25 bp)
TGGTCCCTCTTCTCTACTCGGAGAT
LOC_Os12g43070
OsAffx.7875.1.S1_at--1000--10571Chr12:26718862..26718886 (25 bp)
TTCTCTACTCGGAGATGGTCGTCCA
LOC_Os12g43070
OsAffx.7875.1.S1_at--552--6031Chr12:26718873..26718897 (25 bp)
GAGATGGTCGTCCACCTCTGCATGG
LOC_Os12g43070
Target Sequence 
GATTATTGGCGAGGCTGTTGCCGGAGGTAGAAGACAGCAGCACGAACGCCGGCGGCGTCATGGCGGTCTCTTTCCGGCGG
AAGGTGCTCTACACGGCGGTGTCGCTGCTCGTCTTCCTCGTCGCCGGCGAGCTGCTGCTCTACGGGGTCCAAAACTACTA
CGGCGGCGGCGAGCACGACCCGCGATACTGGATGAACGCCATGTCGGCGTCATTGCGGCCTACGGTGATGGCGCTCGGGT
TGGTCCCTCTTCTCTACTCGGAGATGGTCGTCCACCTCTGCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis