Browse Element(s) Details


Os.56160.1.S1_at

Description gb:AK109499.1
DB_XREF= gi:32994708
TID=Os.56160.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56160 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-207-D06, full insert sequence.
FL= gb:AK109499.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4309011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43050NANA12+26702127..26708907retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g43060OsAffx.20100.2.S1_at11/1112+26710780..26716787retrotransposon protein, putative, unclassified
LOC_Os12g43060OsAffx.20100.2.S1_x_at10/1112+26710780..26716787retrotransposon protein, putative, unclassified
LOC_Os12g43060OsAffx.20100.1.S1_x_at5/1112+26710780..26716787retrotransposon protein, putative, unclassified
LOC_Os12g43060OsAffx.20100.3.S1_x_at4/1112+26710780..26716787retrotransposon protein, putative, unclassified
LOC_Os12g43070OsAffx.7875.1.S1_at11/1112+26718582..26718956hypothetical protein
LOC_Os12g43080OsAffx.20097.1.S1_at10/1112+26719386..26722063hypothetical protein
LOC_Os12g43090Os.56160.1.S1_at11/1112+26723908..26725583expressed protein
LOC_Os12g43100Os.27272.1.S1_at11/1112+26726022..26728746PBS lyase HEAT-like repeat family protein, expressed
LOC_Os12g43110Os.55333.1.S1_at10/1112+26734618..26735291Auxin responsive protein, expressed
LOC_Os12g43120OsAffx.32165.1.S1_at11/1112+26737618..26745501expressed protein
LOC_Os12g43130Os.10025.1.S1_a_at11/1112+26746887..26749996Phytoene synthase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56160.1.S1_at--354--771Chr12:26724499..26724762 (25 bp)
ATGTCCCTCAGATTTACAGGCCTGG
LOC_Os12g43090
Os.56160.1.S1_at--839--1111Chr12:26725201..26725225 (25 bp)
AGTGATCTTTGCTGTGCTCGGGTAC
LOC_Os12g43090
Os.56160.1.S1_at--750--7691Chr12:26725220..26725244 (25 bp)
GGGTACCTCGTCAAGCATCTGATGA
LOC_Os12g43090
Os.56160.1.S1_at--52--8871Chr12:26725239..26725263 (25 bp)
TGATGACGCATTAGGTTCCACCAAT
LOC_Os12g43090
Os.56160.1.S1_at--829--8031Chr12:26725271..26725295 (25 bp)
GGAGTACTGATCTTACTTGGCCTCT
LOC_Os12g43090
Os.56160.1.S1_at--233--2091Chr12:26725330..26725354 (25 bp)
ACATCGCATGCATTGAGTTCTCCCT
LOC_Os12g43090
Os.56160.1.S1_at--238--9511Chr12:26725348..26725372 (25 bp)
TCTCCCTGGTTTGACTGCTGTATTA
LOC_Os12g43090
Os.56160.1.S1_at--800--7891Chr12:26725399..26725423 (25 bp)
GGTTGCTGACATTATGCTTGCGCAT
LOC_Os12g43090
Os.56160.1.S1_at--405--4951Chr12:26725420..26725444 (25 bp)
GCATTCGTGTGCCATCAGATTTTTG
LOC_Os12g43090
Os.56160.1.S1_at--42--5011Chr12:26725444..26725468 (25 bp)
GCATGGTTTTGCACCTCAAGTTGAG
LOC_Os12g43090
Os.56160.1.S1_at--882--631Chr12:26725515..26725539 (25 bp)
ATGCTTGATGACCAGTGTTTTACCT
LOC_Os12g43090
Target Sequence 
ATGTCCCTCAGATTTACAGGCCTGGAGGAACTTGGTAGGTGAGGACGGCGACGCCTACGCTTCTGAGCTCTCGTGGCTCC
CGCCGTTGGGGAACGCCTCAGCTGCCGTCCTCCCCGTCGACACTCTCCGAGTTGCCGCTGGTGCTGGGGGGCCGTATCAT
TCTGTCGTGGCGCTGCTCGTTGCGGCAGTGATCTTTGCTGTGCTCGGGTACCTCGTCAAGCATCTGATGACGCATTAGGT
TCCACCAATTGCTATTGGAGTACTGATCTTACTTGGCCTCTCATAGCATTTAGGTGATTTTTACCCAGTGATTTCACATC
GCATGCATTGAGTTCTCCCTGGTTTGACTGCTGTATTACCAGTTGGCAGAAGTGAGTACCAACTGGTTGCTGACATTATG
CTTGCGCATTCGTGTGCCATCAGATTTTTGCATGGTTTTGCACCTCAAGTTGAGGTTGTATACTGGTTCTATGAGAGTGC
TTTGACGGTGTAAATACTTCATGCTTGATGACCAGTGTTTTACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis