Browse Element(s) Details


Os.10060.1.S1_at

Description gb:AK121117.1
DB_XREF= gi:37990740
TID=Os.10060.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.10060 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023074A22, full insert sequence.
FL= gb:AK101045.1 gb:AK121117.1 gb:AK105819.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2811011/11hydroxyproline-rich glycoprotein family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28070NANA9+17043745..17047410retrotransposon protein, putative, unclassified
LOC_Os09g28080NANA9+17048048..17051339retrotransposon protein, putative, unclassified
LOC_Os09g28090NANA9+17052919..17053350retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g28100Os.27663.1.A1_at11/119+17058794..17061350Rhomboid family protein, expressed
LOC_Os09g28110Os.10060.1.S1_at11/119+17061565..17066526hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os09g28120Os.48051.1.S1_at11/119+17070782..17073107F-box domain containing protein, expressed
LOC_Os09g28130OsAffx.6424.1.S1_at11/119+17074189..17074708dioscorin A, putative, expressed
LOC_Os09g28140NANA9+17075443..17075769retrotransposon protein, putative, unclassified
LOC_Os09g28150Os.49643.1.S1_at11/119+17076677..17078623Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os09g28150Os.54455.1.S1_at1/119+17076677..17078623Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os09g28160Os.23183.1.S1_at11/119+17081094..17082565Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os09g28160OsAffx.17942.1.S1_at11/119+17081094..17082565Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os09g28170OsAffx.26553.2.S1_at2/119+17089942..17090322hypothetical protein
LOC_Os09g28180Os.18717.2.S1_at11/119+17090957..17094316D-mannose binding lectin family protein, expressed
LOC_Os09g28180OsAffx.27348.1.S1_x_at2/119+17090957..17094316D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10060.1.S1_at--32--10311Chr09:17062671..17062695 (25 bp)
TTTCGACCTTCAATGGCTCCATGGA
LOC_Os09g28110
Os.10060.1.S1_at--300--10211Chr09:17062044..17062064 (21 bp)
TATTCTCTCCATTCCTGAAGTGAGA
LOC_Os09g28110
Os.10060.1.S1_at--1044--8751Chr09:17062000..17062024 (25 bp)
TGTTTGCCTACAGAGTTACCAGTGC
LOC_Os09g28110
Os.10060.1.S1_at--655--1191Chr09:17061954..17061978 (25 bp)
AGTTTGCTTCTTGAAATCTCCTGAA
LOC_Os09g28110
Os.10060.1.S1_at--115--9431Chr09:17061915..17061939 (25 bp)
TCGTGAGCGATCGTACTGCAAAGGC
LOC_Os09g28110
Os.10060.1.S1_at--96--8211Chr09:17061850..17061874 (25 bp)
GGCAGGTTTTGCTTATCGGTTACTT
LOC_Os09g28110
Os.10060.1.S1_at--252--2571Chr09:17061823..17061847 (25 bp)
AACTGTATGGTGGTTTCTCGCACTT
LOC_Os09g28110
Os.10060.1.S1_at--568--10411Chr09:17061753..17061777 (25 bp)
TTACCAGGGTTTTTATGTCACGAAG
LOC_Os09g28110
Os.10060.1.S1_at--40--231Chr09:17061704..17061728 (25 bp)
ATATCAAGTTTCTCACCGAAGGGTT
LOC_Os09g28110
Os.10060.1.S1_at--339--6891Chr09:17061626..17061650 (25 bp)
GTATCTTGCGATACGACTGTTCGTT
LOC_Os09g28110
Os.10060.1.S1_at--440--9911Chr09:17061571..17061595 (25 bp)
TACGATACATTTACACCCGTCTTTC
LOC_Os09g28110
Target Sequence 
TTTCGACCTTCAATGGCTCCATGGAAGAAGCGACGAAAAACCAAGTCCCCCCCTTCAATTGCCCCTTCCCCATATTCTCT
CCATTCCTGAAGTGAGACTTGGCTGGTGCCCTGGACTGTTTGCCTACAGAGTTACCAGTGCACAAGGTGGTTGTGGTTGC
AAAGTTTGCTTCTTGAAATCTCCTGAAGCATGGAGTTGCAATCGTGAGCGATCGTACTGCAAAGGCAGGTTTATGAATGC
AATCATGAGCAATCATACTGCAAAAAGGCAGGTTTTGCTTATCGGTTACTTCTAACTGTATGGTGGTTTCTCGCACTTCA
GAGTTGGAGTATAACTGTAGATATAGGTCTGTATTATGCTAATTTACCAGGGTTTTTATGTCACGAAGGTGACTGCCCTA
CGCCTCTACCAAATATCAAGTTTCTCACCGAAGGGTTGGGTGCTTATGGTAGAGGAGAATGTAATGACTTACCATAGTCG
AATTGATGTTGTATCTTGCGATACGACTGTTCGTTTCCTGTAACATCATCATATACTGAGCATAATACGATACATTTACA
CCCGTCTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10060.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis