Browse Element(s) Details


Os.10074.1.S1_at

Description gb:AK072561.1
DB_XREF= gi:32982584
TID=Os.10074.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10074 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023133P17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133P17, full insert sequence.
FL= gb:AK072561.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0681011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06770OsAffx.7025.1.S1_at11/1111+3303434..3305854AP2 domain containing protein, expressed
LOC_Os11g06780Os.51809.1.S1_at10/1111+3309986..3312193Protein kinase domain containing protein, expressed
LOC_Os11g06780Os.46117.1.S1_at1/1111+3309986..3312193Protein kinase domain containing protein, expressed
LOC_Os11g06790Os.46500.1.S1_at5/1111+3323505..3324213transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g06800Os.46500.2.S1_at7/1111+3326426..3327298hypothetical protein
LOC_Os11g06810Os.10074.1.S1_at11/1111+3328352..3334865expressed protein
LOC_Os11g06810Os.5907.1.A1_at1/1111+3328352..3334865expressed protein
LOC_Os11g06820OsAffx.7026.1.S1_x_at11/1111+3338876..3340595AUX1-like permease; 10674-8589, putative, expressed
LOC_Os11g06820OsAffx.7026.1.S1_at11/1111+3338876..3340595AUX1-like permease; 10674-8589, putative, expressed
LOC_Os11g06830OsAffx.28175.1.S1_s_at11/1111+3348224..3348672hypothetical protein
LOC_Os11g06830OsAffx.28175.1.S1_x_at1/1111+3348224..3348672hypothetical protein
LOC_Os11g06840Os.57118.1.S1_at11/1111+3353344..3355631Zinc finger, C2H2 type family protein, expressed
LOC_Os11g06850OsAffx.7027.1.S1_at11/1111+3359042..3360008hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10074.1.S1_at--1065--8211Chr11:3334321..3334345 (25 bp)
GGCAATTCAATTCATAAGCTCTTCA
LOC_Os11g06810
Os.10074.1.S1_at--439--5271Chr11:3334363..3334387 (25 bp)
GAATGCAGCGATACAGTTCGTCTTT
LOC_Os11g06810
Os.10074.1.S1_at--576--6711Chr11:3334378..3334402 (25 bp)
GTTCGTCTTTTGTAGGACAGCCATT
LOC_Os11g06810
Os.10074.1.S1_at--589--3071Chr11:3334422..3334446 (25 bp)
AATCATCTTCTGGACATTCATTCAT
LOC_Os11g06810
Os.10074.1.S1_at--797--8131Chr11:3334433..3334457 (25 bp)
GGACATTCATTCATGCTTTGCTCAA
LOC_Os11g06810
Os.10074.1.S1_at--967--6091Chr11:3334464..3334488 (25 bp)
GAGTCTACTGCTTTGGATCAGTCAC
LOC_Os11g06810
Os.10074.1.S1_at--928--7371Chr11:3334517..3334541 (25 bp)
GTGACCCTGCTGACTACACAGTAAA
LOC_Os11g06810
Os.10074.1.S1_at--885--7111Chr11:3334565..3334589 (25 bp)
GTCTTAAGTTCTCTTGCTCCTAGAA
LOC_Os11g06810
Os.10074.1.S1_at--1096--2831Chr11:3334588..3334612 (25 bp)
AAGTAGCTGCTCTTCCGTTCAGAAG
LOC_Os11g06810
Os.10074.1.S1_at--461--2271Chr11:3334658..3334682 (25 bp)
AAATCTTTGGTGTTCACTGGTCAGG
LOC_Os11g06810
Os.10074.1.S1_at--124--7451Chr11:3334749..3334773 (25 bp)
GTGTACATGCACTATGTTGTGACTT
LOC_Os11g06810
Target Sequence 
GGCAATTCAATTCATAAGCTCTTCAGATTTTTAATCGCAACTGAATGCAGCGATACAGTTCGTCTTTTGTAGGACAGCCA
TTGAAAACAATGNCTTTTGANAATCATCTTCTGGACATTCATTCATGCTTTGCTCAAAAGCTGGAGTCTACTGCTTTGGA
TCAGTCACTGTATTTGCAAGTGAAGTCAAATATGAAGTGACCCTGCTGACTACACAGTAAACACTCAAAACAAGGTGTAA
TTCTGTCTTAAGTTCTCTTGCTCCTAGAAGTAGCTGCTCTTCCGTTCAGAAGCCATATGTAAATTTAATCTATGTAAATT
GTTTGCTGNTGATTCGAAAATCTTTGGTGTTCACTGGTCAGGAGAACTGTCAAATTAGGTACAGCANTGTAACTGAAAGA
ACATCATTACTCAGTTCAGTGAACTGAAGTGTACATGCACTATGTTGTGACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10074.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis