Browse Element(s) Details


Os.10124.3.S1_x_at

Description gb:NM_187038.1
DB_XREF= gi:34901161
GEN=P0030H06.9
TID=Os.10124.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10124 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU055804(S20063),AU055998(S20213),AU055803(S20063)~similar to ankyrin homolog (P0030H06.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) contains ESTs AU055804(S20063),AU055998(S20213),AU055803(S20063)~similar to ankyrin homolog (P0030H06.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2649011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26450NANA7+15212928..15213269hypothetical protein
LOC_Os07g26460OsAffx.5450.1.S1_at11/117+15219787..15221316ABL064Wp, putative
LOC_Os07g26470OsAffx.22421.1.S1_at11/117+15224025..15225575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g26470OsAffx.22421.4.S1_x_at2/117+15224025..15225575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g26470Os.26886.3.S1_x_at1/117+15224025..15225575transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g26480Os.9667.1.S1_at11/117+15229271..15231589P21-Rho-binding domain containing protein, expressed
LOC_Os07g26490Os.10124.3.S1_x_at11/117+15235473..15241349expressed protein
LOC_Os07g26500OsAffx.28600.1.S1_at11/117+15243075..15243390hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10124.3.S1_x_at--612--331Chr07:15236299..15236323 (25 bp)
ATACTTCTGCGCCTTCAAAGACAAG
LOC_Os07g26490
Os.10124.3.S1_x_at--860--7551Chr07:15236275..15236299 (25 bp)
GTGGCCAAGTACCAGTTGTTACATC
LOC_Os07g26490
Os.10124.3.S1_x_at--424--7491Chr07:15236229..15236253 (25 bp)
GTGGGACGTGCCTGGAACAAGCTCT
LOC_Os07g26490
Os.10124.3.S1_x_at--325--2691Chr07:15236211..15236235 (25 bp)
AAGCTCTGGCCAAAGTTCGTCCAAA
LOC_Os07g26490
Os.10124.3.S1_x_at--551--1431Chr07:15236173..15236197 (25 bp)
AGAACAGCACTTTCGTGGTTCCGCA
LOC_Os07g26490
Os.10124.3.S1_x_at--1129--7471Chr07:15236102..15236126 (25 bp)
GTGGGAACCTTCTACGATGGTCCTA
LOC_Os07g26490
Os.10124.3.S1_x_at--637--1871Chr07:15236089..15236113 (25 bp)
ACGATGGTCCTATTCAGTATCCGTC
LOC_Os07g26490
Os.10124.3.S1_x_at--508--6911Chr07:15236073..15236097 (25 bp)
GTATCCGTCAATAGATTCCACGCCA
LOC_Os07g26490
Os.10124.3.S1_x_at--934--3511Chr07:15236037..15236061 (25 bp)
CATGCCTTCTGCTGACGGTGGTACA
LOC_Os07g26490
Os.10124.3.S1_x_at--1026--2891Chr07:15235885..15235909 (25 bp)
AAGGTGCCTGCATTCCGTGTGGTCA
LOC_Os07g26490
Os.10124.3.S1_x_at--825--591Chr07:15235809..15235833 (25 bp)
ATGCCCCATTTGTCGAGCCAAGATT
LOC_Os07g26490
Target Sequence 
ATACTTCTGCGCCTTCAAAGACAAGTGGCCAAGTACCAGTTGTTACATCAAGCAGTAGCACATACAATGGGTGGGACGTG
CCTGGAACAAGCTCTGGCCAAAGTTCGTCCAAACACAACAAAAGCCAGAACAGCACTTTCGTGGTTCCGCAGGAGGCGCT
TCCATCTCTTCCAGTCCCAACTGCGCCTCCACTTGCCGTGGGAACCTTCTACGATGGTCCTATTCAGTATCCGTCAATAG
ATTCCACGCCAGTCGACGTAACCATGCCTTCTGCTGACGGTGGTACAGCGGTAAGCTCTGCAAAACCTGCAGAGAACGAA
GGTGATGCAAAACCTGCAGAAAGTGATGCTAATGCAAGCAACAGCGGTAACACTCCACCGGGAACCTGTGTTATTTGTTT
GGATGCTCCTGTGGAAGGTGCCTGCATTCCGTGTGGTCACATGGCTGGTTGCATGTCCTGCTTGAAGGATATAGAATCAA
AGAAATGGGGATGCCCCATTTGTCGAGCCAAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10124.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis