Browse Element(s) Details


Os.10143.1.S1_at

Description gb:AK098950.1
DB_XREF= gi:32984159
TID=Os.10143.1
CNT=48
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.10143 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013058M01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013058M01, full insert sequence.
FL= gb:AK098950.1 gb:AK062242.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5062011/11Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50590OsAffx.24814.1.S1_at11/112+30889298..30892658hypothetical protein
LOC_Os02g50600Os.26079.1.S1_at11/112+30893712..30895431glycosyl transferase family 8 protein, putative, expressed
LOC_Os02g50610Os.31535.1.A1_at1/112+30898909..30903290hypothetical protein
LOC_Os02g50620Os.10143.1.S1_at11/112+30912914..30917073Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os02g50630Os.47376.1.A1_at11/112+30918595..30922045Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os02g50630Os.57060.1.S1_at1/112+30918595..30922045Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os02g50640Os.18057.1.A1_at11/112+30924204..30928422HEAT repeat family protein, expressed
LOC_Os02g50640OsAffx.3028.1.S1_at11/112+30924204..30928422HEAT repeat family protein, expressed
LOC_Os02g50650NANA2+30934489..30936206transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g50660NANA2+30937667..30942731transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005739cellular_componentmitochondrion
GO:0003863molecular_function3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity
GO:0004739molecular_functionpyruvate dehydrogenase (acetyl-transferring) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10143.1.S1_at--773--9972Chr12:8278808..8278840 (24 bp)
TACCTACAGGTACCATGGCCATTCT
NONE
Os.10143.1.S1_at--751--8431Chr02:30914327..30914351 (25 bp)
GGCCATTCTATGTCAGATCCCGGAA
LOC_Os02g50620
Os.10143.1.S1_at--1038--10231Chr02:30914139..30914163 (25 bp)
TTTGGCTCATGACCTAGCAACTGCT
LOC_Os02g50620
Os.10143.1.S1_at--942--1331Chr02:30913821..30913845 (25 bp)
AGAGTCCTATGCCTGATACTTCTGA
LOC_Os02g50620
Os.10143.1.S1_at--1049--6471Chr02:30913807..30913831 (25 bp)
GATACTTCTGAGCTCTTTACGAATG
LOC_Os02g50620
Os.10143.1.S1_at--1040--8891Chr02:30913254..30913278 (25 bp)
TGAGAGCTACTCTTCCATAGGCTGA
LOC_Os02g50620
Os.10143.1.S1_at--743--1311Chr02:30913221..30913245 (25 bp)
AGATGGCGGCATTATTTCTTCTAAT
LOC_Os02g50620
Os.10143.1.S1_at--831--5371Chr02:30913163..30913187 (25 bp)
GAAGAAGTCCTCAGGCATTTCTGCC
LOC_Os02g50620
Os.10143.1.S1_at--795--10311Chr02:30913060..30913084 (25 bp)
TTTCTGCAATTCATCTAACCGCTGT
LOC_Os02g50620
Os.10143.1.S1_at--80--3251Chr02:30913019..30913043 (25 bp)
CAAGCTTGAGACTTTGCCTGCGTGA
LOC_Os02g50620
Os.10143.1.S1_at--679--9131Chr02:30913001..30913025 (25 bp)
TGCGTGATTGCTCCTTTTCGGAAGA
LOC_Os02g50620
Target Sequence 
TACCTACAGGTACCATGGCCATTCTATGTCAGATCCCGGAAGCACTTACCGTACCAGGGATNGAGATCTCAGGTGTAAGA
CAGGAGCGTGATCCAATTGAAAGGGTTAGGAAGTTGATTTTGGCTCATGACCTAGCAACTGCTGCTGAGCTCAAGGACAT
GGAGAAAGAAATCAGAAAAGAAGTCGATGATGCCATTGCGAAAGCAAAGGAGAGTCCTATGCCTGATACTTCTGAGCTCT
TTACGAATGTATATGTCAAGGGTTTTGGTGTGGAGTCATTTGGGGCAGACAGGAAGGAATTGAGAGCTACTCTTCCATAG
GCTGACAACGAGAAGATGGCGGCATTATTTCTTCTAATATGATATGATAGCCTGGAGAAATAAGCATTGGTGAAGAAGTC
CTCAGGCATTTCTGCCATTCTTTGTTGCAAAAATGAACCTGTATAGAGATGCGTCAGGAAGAATCGCACCATATTTGTTT
TTGCTTCTTTTCCTTTTCTGCAATTCATCTAACCGCTGTTGTCAGGCTTCAAATTCAAGCTTGAGACTTTGCCTGCGTGA
TTGCTCCTTTTCGGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10143.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis