Browse Element(s) Details


Os.18057.1.A1_at

Description gb:CA763386
DB_XREF= gi:25807425
DB_XREF=BR060002A10F10.ab1
CLONE=BR060002A10F10.ab1
TID=Os.18057.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.18057 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5064011/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50610Os.31535.1.A1_at1/112+30898909..30903290hypothetical protein
LOC_Os02g50620Os.10143.1.S1_at11/112+30912914..30917073Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os02g50630Os.47376.1.A1_at11/112+30918595..30922045Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os02g50630Os.57060.1.S1_at1/112+30918595..30922045Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os02g50640Os.18057.1.A1_at11/112+30924204..30928422HEAT repeat family protein, expressed
LOC_Os02g50640OsAffx.3028.1.S1_at11/112+30924204..30928422HEAT repeat family protein, expressed
LOC_Os02g50650NANA2+30934489..30936206transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g50660NANA2+30937667..30942731transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g50670NANA2+30948809..30949546hypothetical protein
LOC_Os02g50680Os.27853.1.S1_at11/112+30952740..30959353AAA-type ATPase family protein, putative, expressed
LOC_Os02g50680OsAffx.16376.1.S1_at1/112+30952740..30959353AAA-type ATPase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009826biological_processunidimensional cell growth
GO:0010031biological_processcircumnutation
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0008017molecular_functionmicrotubule binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18057.1.A1_at--545--10311Chr02:30924765..30924789 (25 bp)
TTTCTCTGAGACTTCCTGAGGGTTT
LOC_Os02g50640
Os.18057.1.A1_at--479--7951Chr02:30924696..30924720 (25 bp)
GGATCATGGTGTTCTACGGGAGTCA
LOC_Os02g50640
Os.18057.1.A1_at--513--9931Chr02:30924682..30924706 (25 bp)
TACGGGAGTCACTGCACTATTGCAA
LOC_Os02g50640
Os.18057.1.A1_at--573--5471Chr02:30924615..30924639 (25 bp)
GAACTCGTTTCTTGAGCTGGATCCT
LOC_Os02g50640
Os.18057.1.A1_at--493--5891Chr02:30924602..30924626 (25 bp)
GAGCTGGATCCTCACTAATTATCAG
LOC_Os02g50640
Os.18057.1.A1_at--614--7671Chr02:30924578..30924602 (25 bp)
GGGATTCGGATTATACAGCCTCACC
LOC_Os02g50640
Os.18057.1.A1_at--972--7051Chr02:30924530..30924554 (25 bp)
GTAACCGTGTTCATGAAACCCTGCT
LOC_Os02g50640
Os.18057.1.A1_at--429--5071Chr02:30924462..30924486 (25 bp)
GCAGCCGTGGTACTTCAGAACTGTT
LOC_Os02g50640
Os.18057.1.A1_at--598--6911Chr02:30924412..30924436 (25 bp)
GTAGGCACAACGTGTTTCTGTACGA
LOC_Os02g50640
Os.18057.1.A1_at--213--2411Chr02:30924354..30924378 (25 bp)
AAACAGCTTCTGTGCTCGTGAGTTT
LOC_Os02g50640
Os.18057.1.A1_at--652--9791Chr02:30924285..30924309 (25 bp)
TAACGGCATTACTGCCCGAGTGATT
LOC_Os02g50640
Target Sequence 
TTTCTCTGAGACTTCCTGAGGGTTTTTTTTCCTTTGTTGGAGCCGGAACTGAAAGCGCGTGGTGTGNATGGATCATGGTG
TTCTACGGGAGTCACTGCACTATTGCAAAGCATAGTNCACTGCAGTATTGCAAAGCATAGATCCTGAGGTAGAACTCGTT
TCTTGAGCTGGATCCTCACTAATTATCAGGGATTCGGATTATACAGCCTCACCGAGAAATGGAGAATGAGGATACAGTAA
CCGTGTTCATGAAACCCTGCTGGTGGAGTTGGGCTTGACAATTGGCCATTATCTTTTGTCCCGCGCAGCCGTGGTACTTC
AGAACTGTTTTATTTTTTTTNCCGTTTATAAGAATGTAGGCACAACGTGTTTCTGTACGAAGCTATGAATGTATCCTGTA
AATAGTTTGGATAAAACAGCTTCTGTGCTCGTGAGTTTTCTTTGCCTTCTTTNTGAACTCTGAAGGTGTTGACAACTNNA
CATAACGGCATTACTGCCCGAGTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18057.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis