Browse Element(s) Details


Os.47376.1.A1_at

Description gb:AK111537.1
DB_XREF= gi:37988200
TID=Os.47376.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47376 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013041C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013041C09, full insert sequence.
FL= gb:AK111537.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5063011/11Transcription factor E2F/dimerisation partner family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50600Os.26079.1.S1_at11/112+30893712..30895431glycosyl transferase family 8 protein, putative, expressed
LOC_Os02g50610Os.31535.1.A1_at1/112+30898909..30903290hypothetical protein
LOC_Os02g50620Os.10143.1.S1_at11/112+30912914..30917073Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os02g50630Os.47376.1.A1_at11/112+30918595..30922045Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os02g50630Os.57060.1.S1_at1/112+30918595..30922045Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os02g50640Os.18057.1.A1_at11/112+30924204..30928422HEAT repeat family protein, expressed
LOC_Os02g50640OsAffx.3028.1.S1_at11/112+30924204..30928422HEAT repeat family protein, expressed
LOC_Os02g50650NANA2+30934489..30936206transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g50660NANA2+30937667..30942731transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0042023biological_processDNA endoreduplication
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47376.1.A1_at--309--2431Chr02:30919712..30919736 (25 bp)
AAAACTGGGAGAGCCTTGCTGCTTC
LOC_Os02g50630
Os.47376.1.A1_at--822--8651Chr02:30918916..30918940 (25 bp)
TGGGCGATCTTTTTGCTCATTATGT
LOC_Os02g50630
Os.47376.1.A1_at--113--8191Chr02:30918891..30918915 (25 bp)
GGAAGCCTGGAAATCGTGGTACTCT
LOC_Os02g50630
Os.47376.1.A1_at--939--7491Chr02:30918876..30918900 (25 bp)
GTGGTACTCTGAATTTGCGCAAGGC
LOC_Os02g50630
Os.47376.1.A1_at--197--10871Chr02:30918829..30918853 (25 bp)
TTGGCATGCCTGTCATTAACCAGTT
LOC_Os02g50630
Os.47376.1.A1_at--141--9711Chr02:30918783..30918807 (25 bp)
TCAAGCACTGTATTTCTTACCGCGT
LOC_Os02g50630
Os.47376.1.A1_at--1136--4651Chr02:30918762..30918786 (25 bp)
GCGTGCTTGGGATTTTACCTGTACA
LOC_Os02g50630
Os.47376.1.A1_at--442--5511Chr02:30918718..30918742 (25 bp)
GAACAAAGACATGACCTAGGCCTAG
LOC_Os02g50630
Os.47376.1.A1_at--459--8431Chr02:30918700..30918724 (25 bp)
GGCCTAGGATCCATTGTATTTACTC
LOC_Os02g50630
Os.47376.1.A1_at--37--231Chr02:30918665..30918689 (25 bp)
ATATCCAGGCTATTCAGTCCAAAAG
LOC_Os02g50630
Os.47376.1.A1_at--647--6451Chr02:30918641..30918665 (25 bp)
GATAAACTCGCCTCATTGTTAGGCA
LOC_Os02g50630
Target Sequence 
AAAACTGGGAGAGCCTTGCTGCTTCATTTCGACCACAATACCAGAACCAAGCATTGGGCGATCTTTTTGCTCATTATGTG
GAAGCCTGGAAATCGTGGTACTCTGAATTTGCGCAAGGCAGCAGCATGATGCAGCAGCACTTTGGCATGCCTGTCATTAA
CCAGTTTTTGTAGTCAAATCATTAATCTCAAGCACTGTATTTCTTACCGCGTGCTTGGGATTTTACCTGTACAATTTGTC
AAGAAAATGAGGGAACAAAGACATGACCTAGGCCTAGGATCCATTGTATTTACTCAATGCAGGAAATATCCAGGCTATTC
AGTCCAAAAGATAAACTCGCCTCATTGTTAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47376.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis