Browse Element(s) Details


Os.10177.1.S1_at

Description gb:AK060830.1
DB_XREF= gi:32970848
TID=Os.10177.1
CNT=33
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10177 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-034-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-034-C03, full insert sequence.
FL= gb:AK121824.1 gb:AK060830.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0136011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01332Os.4982.1.S1_at11/112+180321..18344060S ribosomal protein L9, putative, expressed
LOC_Os02g01340Os.15243.2.S1_x_at11/112+183601..185325Ferredoxin-NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed
LOC_Os02g01340Os.15243.1.S1_a_at11/112+183601..185325Ferredoxin-NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed
LOC_Os02g01350Os.7515.1.S1_s_at11/112+187508..192121expressed protein
LOC_Os02g01360Os.10177.1.S1_at11/112+205428..207507expressed protein
LOC_Os02g01370OsAffx.24048.1.S1_at9/112+207750..209337hypothetical protein
LOC_Os02g01380Os.10797.1.S1_at11/112+219723..222114expressed protein
LOC_Os02g01380OsAffx.2477.1.S1_x_at11/112+219723..222114expressed protein
LOC_Os02g01390OsAffx.22492.1.S1_x_at1/112+230669..236824retrotransposon protein, putative, unclassified
LOC_Os02g01390OsAffx.22492.1.S1_at1/112+230669..236824retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10177.1.S1_at--904--6411Chr02:206943..206967 (25 bp)
GATCATGTTTATGCTCCCAAAGGGA
LOC_Os02g01360
Os.10177.1.S1_at--975--911Chr02:207034..207058 (25 bp)
AGGCACCGTGCTACCAAGGAATGTT
LOC_Os02g01360
Os.10177.1.S1_at--818--8191Chr02:207051..207075 (25 bp)
GGAATGTTCCACCAGTCAGTTGCAT
LOC_Os02g01360
Os.10177.1.S1_at--358--6671Chr02:207069..207093 (25 bp)
GTTGCATGCCCAGGTTTCATAGCAG
LOC_Os02g01360
Os.10177.1.S1_at--897--6571Chr02:207126..207150 (25 bp)
GATTCGTCAGATATTACCTCTCCAA
LOC_Os02g01360
Os.10177.1.S1_at--513--10491Chr02:207169..207193 (25 bp)
TTAATAGGATGCTTGGTGCCACCAA
LOC_Os02g01360
Os.10177.1.S1_at--860--2511Chr02:207263..207287 (25 bp)
AACTTGTGTTGACTACTTTGCCTGC
LOC_Os02g01360
Os.10177.1.S1_at--332--10691Chr02:207280..207304 (25 bp)
TTGCCTGCAGTATATCTCATAACCA
LOC_Os02g01360
Os.10177.1.S1_at--900--5491Chr02:207320..207344 (25 bp)
GAACACCTTGTTTACTGTTTCTGTG
LOC_Os02g01360
Os.10177.1.S1_at--121--9371Chr02:207437..207461 (25 bp)
TCGACTTGATGTTCTGTACAGTGCT
LOC_Os02g01360
Os.10177.1.S1_at--617--9871Chr02:207453..207477 (25 bp)
TACAGTGCTCTTGTGCTTTCTTTTA
LOC_Os02g01360
Target Sequence 
GATCATGTTTATGCTCCCAAAGGGAGGTGTATTGATTGGGGGATTGGCCAGCCATTGCCATCTTGGGGAGAGGTGAAGGA
CTTGCAGTTGCAGGCACCGTGCTACCAAGGAATGTTCCACCAGTCAGTTGCATGCCCAGGTTTCATAGCAGCTCAAGCGG
TCTCCTCCTTGCAAATCGGAGGAGATTCGTCAGATATTACCTCTCCAAGCCAAGGAGCGACTGTCGTTAATAGGATGCTT
GGTGCCACCAACAGGCTCAACCTTTACAGAGAGATATAAAAACATACACTTCACGATATTATTATTGTATATAGTCATCA
AACTTGTGTTGACTACTTTGCCTGCAGTATATCTCATAACCAAAGAAGAATTGGATAGAACACCTTGTTTACTGTTTCTG
TGAGTCTAAAAGGATATCTTATATCAGTCAAATTGGTATTGTAATGAACATATTGTTTTGATTCCCTGTTGATTTTCTTG
GAATGTATCCTGTNTCGACTTGATGTTCTGTACAGTGCTCTTGTGCTTTCTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10177.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis