Browse Element(s) Details


Os.10797.1.S1_at

Description gb:AK120063.1
DB_XREF= gi:37989686
TID=Os.10797.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10797 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001K22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001K22, full insert sequence.
FL= gb:AK120063.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0138011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01360Os.10177.1.S1_at11/112+205428..207507expressed protein
LOC_Os02g01370OsAffx.24048.1.S1_at9/112+207750..209337hypothetical protein
LOC_Os02g01380Os.10797.1.S1_at11/112+219723..222114expressed protein
LOC_Os02g01380OsAffx.2477.1.S1_x_at11/112+219723..222114expressed protein
LOC_Os02g01390OsAffx.22492.1.S1_x_at1/112+230669..236824retrotransposon protein, putative, unclassified
LOC_Os02g01390OsAffx.22492.1.S1_at1/112+230669..236824retrotransposon protein, putative, unclassified
LOC_Os02g01400Os.31312.5.S1_x_at3/112+237453..240670retrotransposon protein, putative, unclassified
LOC_Os02g01400Os.31312.2.S1_x_at2/112+237453..240670retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10797.1.S1_at--759--2531Chr02:220009..220033 (25 bp)
AACTAGTTTAGTGCTTATTGCTCTC
LOC_Os02g01380
Os.10797.1.S1_at--439--10451Chr02:220002..220026 (25 bp)
TTAGTGCTTATTGCTCTCTCTCCTT
LOC_Os02g01380
Os.10797.1.S1_at--951--10671Chr02:219979..220003 (25 bp)
TTCCTTCTCATCATTAGCCATGCAA
LOC_Os02g01380
Os.10797.1.S1_at--1153--651Chr02:219960..219984 (25 bp)
ATGCAATTAAGCTTCTTCTGCTGCT
LOC_Os02g01380
Os.10797.1.S1_at--823--271Chr02:219866..219890 (25 bp)
ATAGTGATAGCTTGGCTGGGCTCAC
LOC_Os02g01380
Os.10797.1.S1_at--668--3671Chr02:219822..219846 (25 bp)
CTTTTGTTGCTTCTGTTGGTCTCTC
LOC_Os02g01380
Os.10797.1.S1_at--274--10611Chr02:219812..219836 (25 bp)
TTCTGTTGGTCTCTCTTAGCTATAT
LOC_Os02g01380
Os.10797.1.S1_at--1140--7151Chr02:219804..219828 (25 bp)
GTCTCTCTTAGCTATATCCATTATT
LOC_Os02g01380
Os.10797.1.S1_at--1098--151Chr02:219785..219809 (25 bp)
ATTATTCCTTAATCCTTACATGTTA
LOC_Os02g01380
Os.10797.1.S1_at--882--1091Chr02:219757..219781 (25 bp)
AGTGAGTACTGCTTTTTCGCTTATA
LOC_Os02g01380
Os.10797.1.S1_at--103--7011Chr02:219752..219776 (25 bp)
GTACTGCTTTTTCGCTTATATATGA
LOC_Os02g01380
Target Sequence 
AACTAGTTTAGTGCTTATTGCTCTCTCTCCTTCCTTCTCATCATTAGCCATGCAATTAAGCTTCTTCTGCTGCTTAATAG
CTCTCTNTCTCTCGTCTCATCGTCTCCTCTCATTCTCATCTGCACANAGAGAGAGAGAGAGAGATAGTGATAGCTTGGCT
GGGCTCACAAGTCACAGCATTTTTCTTCTTTTGTTGCTTCTGTTGGTCTCTCTTAGCTATATCCATTATTCCTTAATCCT
TACATGTTAATTAGTGAGTACTGCTTTTTCGCTTATATATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10797.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis