Browse Element(s) Details


OsAffx.24048.1.S1_at

Description tigr:9630.m00040
TID=OsAffx.24048.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g013709/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01332Os.4982.1.S1_at11/112+180321..18344060S ribosomal protein L9, putative, expressed
LOC_Os02g01340Os.15243.2.S1_x_at11/112+183601..185325Ferredoxin-NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed
LOC_Os02g01340Os.15243.1.S1_a_at11/112+183601..185325Ferredoxin-NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed
LOC_Os02g01350Os.7515.1.S1_s_at11/112+187508..192121expressed protein
LOC_Os02g01360Os.10177.1.S1_at11/112+205428..207507expressed protein
LOC_Os02g01370OsAffx.24048.1.S1_at9/112+207750..209337hypothetical protein
LOC_Os02g01380Os.10797.1.S1_at11/112+219723..222114expressed protein
LOC_Os02g01380OsAffx.2477.1.S1_x_at11/112+219723..222114expressed protein
LOC_Os02g01390OsAffx.22492.1.S1_x_at1/112+230669..236824retrotransposon protein, putative, unclassified
LOC_Os02g01390OsAffx.22492.1.S1_at1/112+230669..236824retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24048.1.S1_at--717--7831Chr02:207780..208016 (25 bp)
GGTAATGTCACCAAGCCCATAGTAG
LOC_Os02g01370
OsAffx.24048.1.S1_at--557--8731Chr02:207785..208021 (25 bp)
TGTCACCAAGCCCATAGTAGATGAT
LOC_Os02g01370
OsAffx.24048.1.S1_at--231--1711Chr02:208000..208025 (25 bp)
ACCAAGCCCATAGTAGATGATGATA
LOC_Os02g01370
OsAffx.24048.1.S1_at--1150--6291Chr02:208016..208037 (22 bp)
GATGATGATATCTCCTGCCCTGACC
LOC_Os02g01370
OsAffx.24048.1.S1_at--142--731Chr02:208020..208415 (25 bp)
ATGATATCTCCTGCCCTGACCTGAT
LOC_Os02g01370
OsAffx.24048.1.S1_at--1039--9211Chr02:208438..208462 (25 bp)
TCCACTCTTCAACTGCAGTACAAAT
LOC_Os02g01370
OsAffx.24048.1.S1_at--696--10471Chr02:208445..208469 (25 bp)
TTCAACTGCAGTACAAATTGTTGCA
LOC_Os02g01370
OsAffx.24048.1.S1_at--227--8231NONE
GGCAATATCGATACACAGAGAGCTT
NONE
OsAffx.24048.1.S1_at--488--9391NONE
TCGATACACAGAGAGCTTGCTGGTG
NONE
OsAffx.24048.1.S1_at--328--8631Chr02:209253..209277 (25 bp)
TGGTGGCAATGCGATGCAAGCTGCC
LOC_Os02g01370
OsAffx.24048.1.S1_at--298--3031Chr02:209260..209284 (25 bp)
AATGCGATGCAAGCTGCCAGGGCCA
LOC_Os02g01370
Target Sequence 
GGTAATGTCACCAAGCCCATAGTAGATGATGATATCTCCTGCCCTGACCTGATGCCCCCTGCATGGCTGCATGCTTCCAC
TCTTCAACTGCAGTACAAATTGTTGCAGAAGATTCAAATAAAGAAATTGGCAATATCGATACACAGAGAGCTTGCTGGTG
GTGGCAATGCGATGCAAGCTGCCAGGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis