Browse Element(s) Details


Os.10178.2.S1_a_at

Description gb:AK071976.1
DB_XREF= gi:32981999
TID=Os.10178.2
CNT=51
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.10178 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033042D15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013085H01, full insert sequence.
FL= gb:AK067386.1 gb:AK062154.1 gb:AK071976.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2419011/11cellulose synthase A catalytic subunit 10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g24160OsAffx.28564.1.S1_at11/117+13725317..13725676expressed protein
LOC_Os07g24160OsAffx.28564.1.S1_x_at11/117+13725317..13725676expressed protein
LOC_Os07g24170OsAffx.16391.1.S1_at11/117+13726984..13727688hypothetical protein
LOC_Os07g24180OsAffx.16392.1.S1_x_at10/117+13736603..13737417hypothetical protein
LOC_Os07g24190Os.10178.1.S1_a_at11/117+13739849..13745511cellulose synthase A catalytic subunit 10, putative, expressed
LOC_Os07g24190Os.10178.2.S1_a_at11/117+13739849..13745511cellulose synthase A catalytic subunit 10, putative, expressed
LOC_Os07g24200OsAffx.16393.1.S1_at11/117+13766562..13767023hypothetical protein
LOC_Os07g24210OsAffx.5428.1.S1_x_at11/117+13768306..13768908hypothetical protein
LOC_Os07g24220OsAffx.28565.1.S1_at11/117+13769736..13770131hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0009833biological_processprimary cell wall biosynthesis (sensu Magnoliophyta)
GO:0030244biological_processcellulose biosynthesis
GO:0005886cellular_componentplasma membrane
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10178.2.S1_a_at--185--4211Chr07:13740408..13740432 (25 bp)
CCCCATCGGTGTGTGCTGAAGGAAT
LOC_Os07g24190
Os.10178.2.S1_a_at--625--8991Chr07:13740392..13740416 (25 bp)
TGAAGGAATACACACTTGGTTCTGT
LOC_Os07g24190
Os.10178.2.S1_a_at--505--211Chr07:13740299..13740323 (25 bp)
ATATTTGGGCAAACCGGAGGCTGCG
LOC_Os07g24190
Os.10178.2.S1_a_at--645--6211Chr07:13740283..13740307 (25 bp)
GAGGCTGCGGCAACCTTGTGAACTT
LOC_Os07g24190
Os.10178.2.S1_a_at--1035--7351Chr07:13740266..13740290 (25 bp)
GTGAACTTCGGCCACCAAGTACAGC
LOC_Os07g24190
Os.10178.2.S1_a_at--1005--3271Chr07:13740241..13740265 (25 bp)
CAAACTGCGTTTGATTGTCCAGCAT
LOC_Os07g24190
Os.10178.2.S1_a_at--645--7751Chr07:13740167..13740191 (25 bp)
GGTGTTGGCATTGCTGTTCATGTAC
LOC_Os07g24190
Os.10178.2.S1_a_at--1075--1091Chr07:13740069..13740093 (25 bp)
AGTGAAACGTGTGTGGGTGCCCATT
LOC_Os07g24190
Os.10178.2.S1_a_at--519--1171Chr07:13739978..13740002 (25 bp)
AGTAATGTAGTGCATCCAGTGTTGT
LOC_Os07g24190
Os.10178.2.S1_a_at--7--9191Chr07:13739964..13739988 (25 bp)
TCCAGTGTTGTAAAGGCGCCCTATT
LOC_Os07g24190
Os.10178.2.S1_a_at--720--4511Chr07:13739949..13739973 (25 bp)
GCGCCCTATTTTTGGTTGGTAATTG
LOC_Os07g24190
Target Sequence 
CCCCATCGGTGTGTGCTGAAGGAATACACACTTGGTTCTGTGTAGATAGAAACACGAAAGGTGATGNNTTGCTTTTGTCC
CATGGTGGTAGCTCAGCCTCATATCTGCAATATTTGGGCAAACCGGAGGCTGCGGCAACCTTGTGAACTTCGGCCACCAA
GTACAGCCAAACTGCGTTTGATTGTCCAGCATTNTTTATTACTGCTTTGGTGGTAAATTTAATTGGGTGAGCTGAACAGA
AGGTGTTGGCATTGCTGTTCATGTACAAACTTGTGTCTCAATAANGCAGGCAGGAATGGATCTGCTATGGAGTAGAAAGG
TGATGCACAGTATTTATGTAGTGAAACGTGTGTGGGTGCCCATTGAAGGGCTTGTTCATTCCTTGTTTCTCTTTTTTACT
TATCTAGAACCAAATGGATCATTTAGTGTTAGTAATGTAGTGCATCCAGTGTTGTAAAGGCGCCCTATTTTTGGTTGGTA
ATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10178.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis